Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1813 ATGCATAGTCAACAAACAGAGAAAGAAGAAGACGACGAAGGCCCCCCACCGGGGTGGCAACCAATCACAAATCATCCGCCGCCACCGCAACAGCAACCGCCGCTGCAACCCCAACCGCAACCGCAACCACCACCGCCTAGTCGATGTGGTTGGGGTCAGATGGTCTGTGGTTCTTGTCATCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTTAAATGTTCATGCTGTGAGGCTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTGAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATTTGGTGCTTCACATGTTAAGTGTTCCTCATGCCAATTTGTGACAGAAATTGGGGCACACAACGAGCGGCCTCCATGGTCTATACAACAAAGGAAACCAGTTCCTGCAAAATCTGGTTGTTAG 435 0.5011 MHSQQTEKEEDDEGPPPGWQPITNHPPPPQQQPPLQPQPQPQPPPPSRCGWGQMVCGSCHRLLSYPRGAKHVKCSCCEAVNIVLEADQVGQVECGSCAVLLMYPFGASHVKCSSCQFVTEIGAHNERPPWSIQQRKPVPAKSGC* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1813 144 MobiDBLite consensus disorder prediction 19 48 - -
Vra7g1813 144 Pfam LSD1 zinc finger 56 80 IPR005735 -
Vra7g1813 144 Pfam LSD1 zinc finger 94 118 IPR005735 -
Vra7g1813 144 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g1813 144 MobiDBLite consensus disorder prediction 1 48 - -
Vra7g1813 144 PANTHER PROTEIN LOL2 3 138 - -
Vra7g1813 144 PANTHER PROTEIN LSD1 3 138 IPR040319 -
Vra7g1813 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 53 83 IPR005735 -
Vra7g1813 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 91 119 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vra7g1813 zf-LSD1 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1813 - - gmx:100780865 221.476