Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1811 ATGGCCTTTGAACACTGCGTTTCGCAGCAATGGAAAACCATCCCTAGCCCCGTGACTGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCGCATGAACCAATCGTTACCCTTTGTGGTCACCTATACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGCCATAGCTCCTAATGACCGTGATGTGAAGGCTTCCTATAGAGATGTTTTCATCCCACCAAGACCACCTGCTTTGGGTACTCAATCTCTCATGCCAACATCATCTCAAAGTGGCCAGCAACTTCCATATCGCAATCCGTATCAGAGTCAGCATTTCAATCCTCCTTTATACCAAGAAGAGGATGAATCGTCAACACAAATGCTTCTCAGTCCTGGTGCCATGGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATGTATACACTTACCCAAATTCTTATCACCTGGCAGTAAGTAACAACCCCAGGTTGAGAAGGCAGGAGATGCAGGCAGACAAATCACTGAACAGAATTTCAATTTTTCTCTTCTGTTGCTTCCTTCTGTGTCTCATCGTCTTCTAA 723 0.4633 MAFEHCVSQQWKTIPSPVTVTENFDGCFDCNICLDFAHEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAPNDRDVKASYRDVFIPPRPPALGTQSLMPTSSQSGQQLPYRNPYQSQHFNPPLYQEEDESSTQMLLSPGAMAPGFPHLVVGMFGEMFYTRVFGNSENVYTYPNSYHLAVSNNPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1811 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra7g1811 240 SMART ring_2 30 76 IPR001841 -
Vra7g1811 240 CDD RING-HC_AtRMA_like 28 77 - -
Vra7g1811 240 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vra7g1811 240 SUPERFAMILY RING/U-box 22 89 - -
Vra7g1811 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 109 IPR013083 -
Vra7g1811 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 240 - -
Vra7g1811 240 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vra7g1811 240 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1811 Vra-Chr7 37338809 37341048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1811 16 226 C3H Transcription Factor Family AT4G27470 40.000 1.66e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1811 K10666 - gmx:100779793 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1811 7 37338809 37341048 Vra10g1319 10 18563585 18565589 PCT