Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1810 ATGTTCGGTTCATCGTCTTCCGCTCCGTTCAAGATGAGAGTCACCAACACGCCCTCCAGTGACCTCGTTCTCACCAACCTCGCCTACTGTTCCCCCTCCGATCTTCGCAACTTCGCCGTCCCCGGTCACAAAAACCTCTACCTAGCCACCGTCGCCGATTCCTTCGTCCTGTCTCTCTCTGCTCATGACAGCATAGGCAGCGACCAGATTGGGTTGAACTCCATTCAACGGCGGTGTGCCAAAGTTTCTAGTGGTGATTCCGTACAATTGACCCGATTTGTGCCTCCCGACGACTTCAACCTCGCACTGCTTACCATTGATTTGGAATTTGTTAAAAAGGGGAATAAGAGTGAGCAGATTGATGCTGTTCTACTGGCTAAGCAACTCCGGAAGAGATTTTCAAACCAGGTTATGACTGTGGGGCAAAAAGTGTTATTTGAGTACCATGGAAATAACTATAGCTTTACTGTCAGTCAAGCTACTGTTGAAGGCCAACAAAAGTCCAATTCTCTTGAAAGAGGGATGATTTCTGATGACACGTACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAACCAACGGGAGGGGGCAACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGCTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGGGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGACGCCGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGGGGTTCAACTCGGGATGGTACTGGAGTTCATGACAGCATAGTAAATCAGCTTCTGACTAAGATAGATGGTGTGGAGTCACTCAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTCTTAAGACCAGGGAGATTGGAAGTCCAGGTTGAGATAAGTCTTCCTGATGAAAATGGTCGACTACAAATTCTTCAAATTCACACCAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCCCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTGTCATATGCTTTAAATAGACAATTAAGTCTAGATGATCTCACTAAGCAAGTGGAGGAAGAGAACATTAAGGTTACAATGGAAGACTTTTTGAATGCACTCCAAGAAGTTATTCCGGCATTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGACTACATGGCATGGTGGAGTGTGGTGATCGTCATAAACACATTTACCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGATCCCGTGGCAGTGGTAAAACTGCACTAGCAGCTACTGTTGGTATTGACAGTGATTTCCCGTATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAGGTCACCCTTGAGTGTCATAGTTCTTGATGACATTGAGAGATTATTAGAGTATGTAGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTTTTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTGTTGGCACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCCGTTACATACCACGTTCCTACCTTGAACACAAAGGATGCAAAGAAGGTCCTTGAACAGTTGAGTGTATTCTCTGAGGACGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAACTATACATGTTGATTGAAATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCGGAGGCCATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATTATAA 2226 0.4299 MFGSSSSAPFKMRVTNTPSSDLVLTNLAYCSPSDLRNFAVPGHKNLYLATVADSFVLSLSAHDSIGSDQIGLNSIQRRCAKVSSGDSVQLTRFVPPDDFNLALLTIDLEFVKKGNKSEQIDAVLLAKQLRKRFSNQVMTVGQKVLFEYHGNNYSFTVSQATVEGQQKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVVGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDAKKVLEQLSVFSEDDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKEKINISHFYDCLQDVVRL* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1810 741 Pfam Cell division protein 48 (CDC48), domain 2 119 182 IPR004201 -
Vra7g1810 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 493 IPR027417 -
Vra7g1810 741 SMART CDC48_N_2 11 96 IPR003338 -
Vra7g1810 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 710 IPR027417 -
Vra7g1810 741 Gene3D - 10 93 - -
Vra7g1810 741 Gene3D - 492 663 IPR027417 -
Vra7g1810 741 SUPERFAMILY ADC-like 9 93 IPR009010 -
Vra7g1810 741 PANTHER BNAA03G50350D PROTEIN 2 37 - -
Vra7g1810 741 PANTHER BNAA03G50350D PROTEIN 61 741 - -
Vra7g1810 741 CDD AAA 252 395 - -
Vra7g1810 741 SMART AAA_5 250 397 IPR003593 -
Vra7g1810 741 SMART AAA_5 530 668 IPR003593 -
Vra7g1810 741 CDD AAA 524 642 - -
Vra7g1810 741 Pfam ATPase family associated with various cellular activities (AAA) 254 394 IPR003959 GO:0005524|GO:0016887
Vra7g1810 741 Pfam ATPase family associated with various cellular activities (AAA) 535 648 IPR003959 GO:0005524|GO:0016887
Vra7g1810 741 SUPERFAMILY Cdc48 domain 2-like 96 199 IPR029067 -
Vra7g1810 741 Pfam AAA+ lid domain 421 476 IPR041569 -
Vra7g1810 741 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Vra7g1810 741 PANTHER VESICULAR-FUSION PROTEIN NSF 61 741 IPR039812 GO:0016887|GO:0035494
Vra7g1810 741 PANTHER VESICULAR-FUSION PROTEIN NSF 2 37 IPR039812 GO:0016887|GO:0035494
Vra7g1810 741 Gene3D - 204 395 IPR027417 -
Vra7g1810 741 Gene3D - 396 483 - -
Vra7g1810 741 Gene3D - 97 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1810 Vra-Chr7 37313324 37323886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1810 245 461 Calmodulin-binding Proteins AT3G56690 38.914 2.67e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1810 K06027 - gmx:100779259 1342.02