LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g1809	ATGGTTGATAATAGTGTGTTAGAGCTGAACCTTGGTTTAGGTAACAACAACAATAATAAGAACAATAACAACAACAACGTTGTTGGTGGTGATGCACATGCAGATGCAGATGCAGGACAGTCAGCGAGGCAAAGGTGTCCGGCACCATTTCTGTTGAAGACGTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATGACAAGAATTGTGTCGTGGAATGAAGAAGGAAGTGGTTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCATACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAACACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACGAGAAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTTAAGTCTTCTTCTGAGGAAAATGCAACAGAAGAAAACAATCAGCAACTACTTATGGAAGAGAACAAGAACCTTAAGAAAGAGAGATTAGAGCTTCAAATGCAGATTGAAGAATGCAAAGCACTTGAAATCAAGTTGCTCGCATGCCTCTCTCAGTTTATGGATACCCAACAAACTAAAATTAGGAGACTTTGTTAA	654	0.4021	MVDNSVLELNLGLGNNNNNKNNNNNNVVGGDAHADADAGQSARQRCPAPFLLKTYDLLEEGESEDMTRIVSWNEEGSGFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATEENNQQLLMEENKNLKKERLELQMQIEECKALEIKLLACLSQFMDTQQTKIRRLC*	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g1809	217	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE	36	217	-	-
	Vra7g1809	217	ProSitePatterns	HSF-type DNA-binding domain signature.	92	116	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	SUPERFAMILY	"Winged helix" DNA-binding domain	47	142	IPR036390	-
	Vra7g1809	217	PRINTS	Heat shock factor (HSF) domain signature	50	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	PRINTS	Heat shock factor (HSF) domain signature	91	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	PRINTS	Heat shock factor (HSF) domain signature	104	116	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	SMART	hsfneu3	46	142	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	36	217	IPR027725	-
	Vra7g1809	217	Gene3D	-	42	143	IPR036388	-
	Vra7g1809	217	Coils	Coil	160	197	-	-
	Vra7g1809	217	MobiDBLite	consensus disorder prediction	13	29	-	-
	Vra7g1809	217	Pfam	HSF-type DNA-binding	50	142	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g1809	217	MobiDBLite	consensus disorder prediction	13	41	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g1809	Vra-Chr7	37304471	37306931	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g1809	38	211	HSF	AT5G62020	35.407	2.30e-41	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra7g1809		HSF_DNA-bind	1.4e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g1809	K09419		-	gmx:100789792	295.434