Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1800 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGCAATCCTTCTCATACTGCTAATGAGATTGATGGCTTTCCGCTTGATAATGTTAAGAATTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGACAAGTAGCAGTGAAGACACTTTCTGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTATCTGAAATTAAAACTATATCAAATGTTAAACATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAAACTAATCGCATATTAGTGTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGTGCAAGAGGTTCGAATATCAGATTAGACTGGAGAAAAAGATCTGATATTTGCATGGGCACTGCTAGAGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCATAGAGATATAAAGGCAAGCAACATACTACTTGACAAACATTTCAAGCCAAAAATAGGAGATTTCGGATTGGCTAAATTATTTCCAGATGACATCACTCATATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGGCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGTGTTCTTATTCTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTCCTCTTGGAATGGGCCTGGCAACTATATGAAAATGGGAAACTATTGGAACTTGTGGATCCAGACATGGTTGAATTCCCTGAGGAAGAGGTAGTTAGATACATGAAGGTTGCTTTTTTCTGCACACAAGCTGCAGCAAGTAGAAGGCCAATGATGTCTCAAGTTGTGAATATGCTGTCCAAGAACACGAGGCTGAATGAAAAGGAACTAAGTGCACCAGGATTTTTCCAGGATTCAGGAACATCTTCTCAGAAGAAGTCATCCTTTGAATCCACCAGCTATCAGTTTAGCTCTAACCCTTCCAGTATTACGCAGTTGGCCCCACGTTGA 1104 0.4067 MSCGCFGASTLKKKSNPSHTANEIDGFPLDNVKNFSDKDLRLATDNYHPSKKLGRGGFGTVYQGTLKNGRQVAVKTLSAGSKQGVREFLSEIKTISNVKHPNLVELVGCCVQETNRILVYEYVENNSLDRALLGARGSNIRLDWRKRSDICMGTARGLAFLHEELVPHIVHRDIKASNILLDKHFKPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYENGKLLELVDPDMVEFPEEEVVRYMKVAFFCTQAAASRRPMMSQVVNMLSKNTRLNEKELSAPGFFQDSGTSSQKKSSFESTSYQFSSNPSSITQLAPR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1800 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Vra7g1800 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vra7g1800 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vra7g1800 367 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Vra7g1800 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1800 367 MobiDBLite consensus disorder prediction 333 367 - -
Vra7g1800 367 PANTHER - 1 359 - -
Vra7g1800 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Vra7g1800 367 MobiDBLite consensus disorder prediction 330 367 - -
Vra7g1800 367 SUPERFAMILY Protein kinase-like (PK-like) 31 350 IPR011009 -
Vra7g1800 367 CDD STKc_IRAK 53 319 - -
Vra7g1800 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1800 367 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1800 Vra-Chr7 37185530 37190664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1800 35 357 Receptor kinase-like Gene Family AT1G56120 50.920 1.70e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra7g1800 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1800 - - gmx:100788143 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1800 7 37185530 37190664 Vra10g1335 10 18686254 18689651 PCT