Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1781 ATGATGAAGCATAGTGGAACAAAGTATTCCTCCTTCATCAATCATTATAAATACACATGCAACTCTCTTTCTCCTTCAACAAATTTCATTCAAAAGAGGATCTCTCACTTCCACAATATGGATAACATTGTATTAAAGCTCACTACTTCATACACCTTGCTTCTTTTTCTTTTCCTATCTTATAAGCCTGCTCTTTCGTTTTCTTCTAGAAATAGCCAATATTGGGGTGGTGACAGGATTTTGAGCTCTGCTTATAATGATGATCTTGTCACTAACTTGCCTGGTCAACCCAAGGTGAATTTCCAGCACTATGCTGGATATGTCACAGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCAGAAGAGAAACCGTTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATACGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACAGTGATGGCCATGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCAAATACAAGCAGTGACTATGACCAATTGGGAGATGATTTAACAGCTAACGATGCTTACTCTTTTCTTCACAACTGGTTTCAAAAGTTTCCATCATACAGAACGAGAGCGTTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCTCTCTATATTGATCTCAAGGGTATTCTGTTGGGTAACCCAGAAACTTCTGATGCTGAGGACTGGATGGGCCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCATAAAATAATCAAAACAAGTTGTGACTTTAACAGCACTGATCCATGGCGTAACGAAGATTGTAGTGAAGCTGTGGATGAAGTACTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTCTGCTTTGCCAGCACAGCACGTTCAGACGATCAATCCATGCAAACTTCCATGAAGCTTACATCTAAAATGATGCCTAGGATGTTGGGTGGCTACGATCCATGCCTTGATGACTATGCTAAAGCTTTCTATAATAAACCAGATGTTCAGAAGGCTCTTCATGCCAGTGATGGTCACAACCTAAAGAATTGGACCATTTGCAACAACAAGATATTCATTGACTGGGCAGATTCAAAGCCATCTGTTATCCCAATTTACAAGAAGCTTATGTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCGGTGTTGTCCACAAGATACAGCTTAAGCTCTCTTTCCTTGTCTGTCACTAAATCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGTGGATGGTTTGAAGAATACGAGGGTCTTACATTTGCAACGTTTCGAGGAGCTGGGCATGCAGTTCCCTGTTTTAAACCAAGCAATTCACTTGCGTTCTTCACTTCCTTTCTGAATGGAGAATCACCACCTTCCACAAAATAA 1569 0.4168 MMKHSGTKYSSFINHYKYTCNSLSPSTNFIQKRISHFHNMDNIVLKLTTSYTLLLFLFLSYKPALSFSSRNSQYWGGDRILSSAYNDDLVTNLPGQPKVNFQHYAGYVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGHGLKFNNFSWNREASMLFLESPVGVGFSYSNTSSDYDQLGDDLTANDAYSFLHNWFQKFPSYRTRAFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKIIKTSCDFNSTDPWRNEDCSEAVDEVLKQYNEIDIYSLYTSVCFASTARSDDQSMQTSMKLTSKMMPRMLGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLKNWTICNNKIFIDWADSKPSVIPIYKKLMSAGLRIWVYSGDTDGRVPVLSTRYSLSSLSLSVTKSWRPWYHENEVSGWFEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLNGESPPSTK* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1781 522 Gene3D - 374 410 - -
Vra7g1781 522 Pfam Serine carboxypeptidase 94 515 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 48 519 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 ProSitePatterns Serine carboxypeptidases, serine active site. 233 240 IPR018202 GO:0004185
Vra7g1781 522 Gene3D alpha/beta hydrolase 84 343 IPR029058 -
Vra7g1781 522 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 182 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 PRINTS Carboxypeptidase C serine protease (S10) family signature 183 193 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 PRINTS Carboxypeptidase C serine protease (S10) family signature 219 244 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 PRINTS Carboxypeptidase C serine protease (S10) family signature 485 498 IPR001563 GO:0004185|GO:0006508
Vra7g1781 522 SUPERFAMILY alpha/beta-Hydrolases 87 516 IPR029058 -
Vra7g1781 522 Gene3D - 421 515 - -
Vra7g1781 522 PANTHER CARBOXYPEPTIDASE 48 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1781 Vra-Chr7 36850070 36853522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1781 379 516 Calmodulin-binding Proteins AT2G22960 33.813 3.91e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1781 K16297 - gmx:100815993 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1781 7 36850070 36853522 Vra10g1353 10 18819959 18823362 PCT