Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra7g1776 | ATGGCGGATGATGATGTCGACTTTTCGAAACTGTTCCATGGTGATGATGACGACGATGACATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTCGATGAAGACGATGATTGTGATTTTTTGGAGAAAATTCCCGATGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACAACAGTTTTCTAGGCTGGGCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGGCTCGGATTCCGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGAAAATTCTTGGCTTGATATTGAACCTGAAAACGAGGGACCTCAATCCCAGGCGTGCTCCTCTCCAAATGCATTTCCCGGTAATCTCAGTAACTCCCTCTCCCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAGAGGACCAGAGTCTCTAAACATGAGGTACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAAAGATATATCAATTTGTAGAGATAATTTGAATCCAAGTCTGTGGAAAGGTGAAAATGAGATCCAATTCAAGCATTTCCGCGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATAGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCTGGGCAACAGGAAAATGATTCGTGTACATCTTTTGAAGCATTTATGGATGCTGATAGATTTTTGCATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCTCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACACTTCTCTTGGTATTTTTCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAGTGTGGAGTTAAATTCTGATATTACATGTATGAGTAGTGGCATGCCCTCAAACACTACTGGGTGGACGTCTTTTCAAGATTTAACTGATAATGTTTATCCATCTTTTCATTCTAGAAAAGTTAATTTTGATGACCTGCCATCATTGTCTCTTTCAGCTTATGATTCATACGTACCATATGGAGACCATTATCAGGATGCTAAGTTCAATGTAGGCCAATCGGTGAGACAAACACCTGATATTTTTTCTTCTATAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATGTCTGGGATATCAAATCAATATCAAGATAGCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCAACATAAACTTGCTGATTCTCATCTTTCAAAAGGAAAATTTGAGAATTTCCATGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCAGTGGAAATTCCTCTAATATTTCTCAATCGTCTAGATACGCTGAATCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGGGTTGCATTGCAGGATCTATCTCAGCCAAGGTCAGAGGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTTAATTGCTCTGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACGATTGCATTAATATTAAAGGAAAGACCTCCATTACCTAATGGGGGCACCAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGATGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATGAGTCAAGTAGACATCCAATCAAGAGTATGAATTTGCAAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAATTGCGTAGCAAGGTAACTAGTCAAACAAAAATCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGTAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCTTGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGGGCAAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGATGTCTATACATCATTTTGTTCTAAAATTAAGAATCGAATTAGCAGAGATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATACGCTGATGCTGGCACTGTCAAGCAAAATTATGTCAACATTTTGCTAATGCTCCTGCGCCTTAGACAAGCTTGTGATCATCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAAGGATCCTCCGGAAGATGCATTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAGTTCGACTGAGCACATCTAGAGTATTCTCAAAAGTCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGTCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTTCTATACATCAAAAAGCACTTCTGAGAATAGCACTTTGAGGGAAGATAATGATTGCCCTGGGAACTCCTCGGATGCTGAAAATGGGAAATCCTCAATTAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGAGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCCAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGTCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGACAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA | 4032 | 0.4048 | MADDDVDFSKLFHGDDDDDDMFYIDMNTVQKVLDEDDDCDFLEKIPDDSSSKNVSPSESGTHDSFQIQNGSQVLEEQQFSRLGFADSVTSCSPFCSDGSDSGVRGSVGVSDSVENSWLDIEPENEGPQSQACSSPNAFPGNLSNSLSPGESDEVFCTERTRVSKHEVPACSVESSFPEAQSKDISICRDNLNPSLWKGENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGQQENDSCTSFEAFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADTSLGIFPNGFCSQLPNDEMMNNMKAKSVELNSDITCMSSGMPSNTTGWTSFQDLTDNVYPSFHSRKVNFDDLPSLSLSAYDSYVPYGDHYQDAKFNVGQSVRQTPDIFSSIGSQAYQFYENEDNYAVMSGISNQYQDSNGRIASFQENVDNLNLQAANISWPHAQALITSEKQFGCVKREGGVQHKLADSHLSKGKFENFHVEEDPDVCIIEDISHPAPTSRSTISGNSSNISQSSRYAESQSYMVGSTRLKACDERNILRVALQDLSQPRSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSFNCSGGILADDQGLGKTVSTIALILKERPPLPNGGTNAHKSELDSLNLDVDDDVLPQNGRVKEESNICEDESSRHPIKSMNLQNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTKISVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFCSKIKNRISRDPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICKDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKVRLSTSRVFSKVTLNNCLSDQGCDNSPGCPASEVEEFEPWSQSQSYESSKIKAALEVLKSLRKPQFYTSKSTSENSTLREDNDCPGNSSDAENGKSSINSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEECLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM* | 1344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra7g1776 | 1343 | Pfam | SNF2-related domain | 603 | 987 | IPR000330 | GO:0005524|GO:0140658 | |
| Vra7g1776 | 1343 | SUPERFAMILY | RING/U-box | 1023 | 1083 | - | - | |
| Vra7g1776 | 1343 | Pfam | Helicase conserved C-terminal domain | 1186 | 1285 | IPR001650 | - | |
| Vra7g1776 | 1343 | SMART | ring_2 | 1026 | 1064 | IPR001841 | - | |
| Vra7g1776 | 1343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1011 | 1077 | IPR013083 | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 48 | 72 | - | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 119 | 150 | - | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 761 | 805 | - | - | |
| Vra7g1776 | 1343 | Pfam | Zinc finger, C3HC4 type (RING finger) | 1026 | 1062 | IPR018957 | GO:0046872 | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 40 | 72 | - | - | |
| Vra7g1776 | 1343 | Gene3D | - | 557 | 647 | IPR038718 | - | |
| Vra7g1776 | 1343 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1179 | 1338 | IPR001650 | - | |
| Vra7g1776 | 1343 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 494 | 1342 | - | - | |
| Vra7g1776 | 1343 | SMART | helicmild6 | 1202 | 1285 | IPR001650 | - | |
| Vra7g1776 | 1343 | SMART | ultradead3 | 584 | 887 | IPR014001 | - | |
| Vra7g1776 | 1343 | CDD | SF2_C_SNF | 1188 | 1295 | - | - | |
| Vra7g1776 | 1343 | ProSitePatterns | Zinc finger RING-type signature. | 1041 | 1050 | IPR017907 | - | |
| Vra7g1776 | 1343 | Gene3D | - | 925 | 1343 | IPR027417 | - | |
| Vra7g1776 | 1343 | Coils | Coil | 438 | 458 | - | - | |
| Vra7g1776 | 1343 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 577 | 910 | IPR027417 | - | |
| Vra7g1776 | 1343 | CDD | DEXDc_SHPRH-like | 588 | 910 | - | - | |
| Vra7g1776 | 1343 | ProSiteProfiles | Zinc finger RING-type profile. | 1026 | 1065 | IPR001841 | - | |
| Vra7g1776 | 1343 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 918 | 1342 | IPR027417 | - | |
| Vra7g1776 | 1343 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 699 | 872 | IPR014001 | - | |
| Vra7g1776 | 1343 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 494 | 1342 | - | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 1137 | 1169 | - | - | |
| Vra7g1776 | 1343 | MobiDBLite | consensus disorder prediction | 763 | 785 | - | - | |
| Vra7g1776 | 1343 | Gene3D | - | 797 | 911 | IPR038718 | - | |
| Vra7g1776 | 1343 | Gene3D | - | 682 | 773 | IPR038718 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra7g1776 | Vra-Chr7 | 36798104 | 36806588 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra7g1776 | 486 | 1342 | RAD5 or RAD16-like Gene Family | AT1G61140 | 59.168 | 0.0 | 945 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Vra7g1776 | SNF2_N | 1.3e-67 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra7g1776 | - | - | gmx:100802436 | 2095.86 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vra7g1776 | 7 | 36798104 | 36806588 | Vra10g1354 | 10 | 18828208 | 18837646 | PCT |