Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1760 ATGAGTTCAGCACATGCTCCTCAAGATTTTGATCATAGCCTAGATGATGTGGAGGCGGGGAAAGAAAGCGTGAACCTTGATAAGTTCTTCGAGGAAGTGGAGGAGGTGAAAGAGGACATGAGGAGCGTGGAGATGCTGTACAGAAAGCTGCAAGAGGCGAACGAGGAGAGCAAAACGGCGCACACGGCCAAGGCGATGAAGGAGGTTCGGGCGCGAATGGATAAGGACGTGGCGCTGGTGCTGAAGCGCGTGAAGGTGATAAAGGGGAAGCTGGAGGCGCTGGAGCGGTCGAACGCGGCGAACCGGAGCTTGCCGGGGTGCGGGCCGGGGTCGTCGGCGGACCGGACGAGGACGTCGGTGGTGAGCGGGTTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAGGGGCTTCGGGCGCGCATACAGATGGAGTACAAGGAGACGGTGGAAAGGAGGTACTTCACGATCACGGGGGAGAAGGCGGAGGAGGAAACGATCGAGAATTTGATATCAAGTGGGGAGAGCGAAAGCTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAGGGGTCAGATAATGGACACGATATCGGAGATTCAGGAGCGGCACGACGCCGTTAAGGAGATTGAGAAGAACTTGATGGAACTGCACCAGGTTTTTCTGGACATGGCGGCGATGGTGGAGGCGCAGGGGCAGCAGCTGAACAACATCGAGAGCCACGTGGCGCATGCGAGTTCGTTTGTGCGACGGGGCACCGAGCAGCTTCAGGATGCGAAAGAGATTCAGAAGAGTTCGAGGAAGTGGACCTGTTATGCCATCATTCTCGGCGCTGTTCTCATTGTTTTGCTTCTCTTCCCTCTCCTCACCTCGCTCTTGCCTCATCTCTTGAGGTGA 894 0.566 MSSAHAPQDFDHSLDDVEAGKESVNLDKFFEEVEEVKEDMRSVEMLYRKLQEANEESKTAHTAKAMKEVRARMDKDVALVLKRVKVIKGKLEALERSNAANRSLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARIQMEYKETVERRYFTITGEKAEEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLMELHQVFLDMAAMVEAQGQQLNNIESHVAHASSFVRRGTEQLQDAKEIQKSSRKWTCYAIILGAVLIVLLLFPLLTSLLPHLLR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1760 297 SUPERFAMILY t-snare proteins 25 251 IPR010989 GO:0016020|GO:0016192
Vra7g1760 297 SMART SynN_4 21 147 IPR006011 GO:0016020
Vra7g1760 297 PANTHER SYNTAXIN 12 288 IPR045242 -
Vra7g1760 297 Gene3D - 26 153 - -
Vra7g1760 297 SMART tSNARE_6 191 258 IPR000727 -
Vra7g1760 297 ProSitePatterns Syntaxin / epimorphin family signature. 202 241 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra7g1760 297 CDD SynN 39 183 IPR006011 GO:0016020
Vra7g1760 297 Pfam Syntaxin 28 231 IPR006011 GO:0016020
Vra7g1760 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 196 258 IPR000727 -
Vra7g1760 297 Gene3D - 187 288 - -
Vra7g1760 297 Coils Coil 26 56 - -
Vra7g1760 297 CDD SNARE_syntaxin1-like 195 256 - -
Vra7g1760 297 Pfam SNARE domain 233 284 IPR000727 -
Vra7g1760 297 PANTHER SYNTAXIN-124-RELATED 12 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1760 Vra-Chr7 36528426 36529577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1760 14 296 SNARE and Associated Proteins AT1G61290 75.618 6.38e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1760 K08486 - gmx:100818999 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1760 7 36528426 36529577 Vra10g1373 10 18999679 19001804 PCT