Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1743 ATGGGTAGGTCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGACCATGGACAACAGAAGAAGACCAGAAACTCGTTGATTACATTCAGAAACATGGCTACGGCAATTGGAGAGTACTTCCTAAGAATGCTGGGTTGCAGAGGTGTGGCAAGAGTTGTCGACTCCGATGGACAAACTATCTCCGACCAGATATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGGCCATAATACAACTACATAGCATTCTTGGAAACAAGTGGTCGGCTATTGCTTCTCGTTTGCCTGGAAGAACAGACAATGAAATCAAGAATTACTGGAATACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTGACGCATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTTTATGCTCCAACACACATGAACATCCAAAGACTCCTTGGCACACAGACAATGGTGAACCCTGAACTTTTAAAGCTTGCTTCATCGCTCTTTTCTTCTCAGCATCGTGAAAACCTCAACACCTGTCCACAAAATTGTGAATACAACTTGCTCTGTGATCCACAAATTAACCAAATCCCACACCTCGTACAGACTCAGGAGTTTTCTCAAAAACCATGTAAAACACAAGACGATACAATGAATCCCCCTTGTTCTTCCTTGTCAATGCCTTTCGCTCAAGAACAGTTTCTTGAATGCAATATGAACCCGTACCCTTCTGTTTTCCATGACTCCTCCTTCCAACAACATTCTCAACCAAGTGAATTACAATGCAACGGAATCGATACTAGCTATGTTGCTCAATTACCAAGCTATAACTACCATGGCTCTGATTATGACGCAAATCTTATGGACCCTTCTGAATCCTCAACCTATAACAGCAATCAGAATTTCAGCTTTGCTTCAGTTATCTCAACGCCTTCGTCAAGCCCCACGCCGTTAAATTCGAACTCGACGTACGTCAATGGAAGTAGCAGCACTGAGGATGAGATAGAAAGCTATGTCAGCAGCAACTTGATGAGATTAATTGAAAGCCCAGACATGTTGGGTGTGAATGAGTTCATATAA 1092 0.4295 MGRSPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEEAIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYAPTHMNIQRLLGTQTMVNPELLKLASSLFSSQHRENLNTCPQNCEYNLLCDPQINQIPHLVQTQEFSQKPCKTQDDTMNPPCSSLSMPFAQEQFLECNMNPYPSVFHDSSFQQHSQPSELQCNGIDTSYVAQLPSYNYHGSDYDANLMDPSESSTYNSNQNFSFASVISTPSSSPTPLNSNSTYVNGSSSTEDEIESYVSSNLMRLIESPDMLGVNEFI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1743 363 CDD SANT 69 112 IPR001005 -
Vra7g1743 363 CDD SANT 16 61 IPR001005 -
Vra7g1743 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 346 - -
Vra7g1743 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g1743 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra7g1743 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g1743 363 SMART sant 13 63 IPR001005 -
Vra7g1743 363 SMART sant 66 114 IPR001005 -
Vra7g1743 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra7g1743 363 Gene3D - 13 66 - -
Vra7g1743 363 Gene3D - 69 116 - -
Vra7g1743 363 PANTHER TRANSCRIPTION FACTOR MYB74 1 346 - -
Vra7g1743 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g1743 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra7g1743 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1743 Vra-Chr7 36206435 36208184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1743 1 363 MYB Transcription Factor Family AT4G21440 56.233 2.65e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1743 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1743 K09422 - gmx:100808310 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1743 7 36206435 36208184 Vra7g1743 7 36206435 36208184 ECH
Vra7g1743 7 36206435 36208184 Vra10g1385 10 19106775 19108457 PCT