Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1742 ATGACGAAAAAACCGAAGGCGGAGGGAGCGGAGGAGCCTTTGCCGGACCACCTCCGGTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGAAAGCCTGAAGCTGTGCGAGATTCACTACCTCCAAGGTCGCCATCGGCAGTACAAGGAGAAGGTTCCGGAGTCCTTGAAGCTTCACCGGAAGCGCAAGACGAGCGACGAGGAGCCTAGTGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTCGGAGAGTCCCGAGTCCCCGGTGGCGGCGACTCCTTCTCTTGCGAAGAAGAAGGCGCCGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGGGCAAGAAGAAAAATAAGAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCTACTCGTGATTACGACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTTGATTCTAGAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCGGGGAAGTTGCAGATTGCGCCTTATGGATCGAACTTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTGATCCAGTGTTCGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATTTGGATACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAGCTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAGCGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGAAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCTATTTTGGATCTCCATAGAAGCTGCCCGAGCTGTTCATATAGCCTATGCTCAAGTTGTTGTCTGGAATTAAGTCAGGGAAAAGCATCTGGAGAAATTAACTTATCTGCATTCAGTCGACTTGATAAAATGAAAAGTAGCAGTGCTAGTGAGAGCCAGACTTTGGACGAGAAGCCCATATCTAGTGATACTTCAATATTGACTGAGTGGACAAATTGTAATGGCATTGATACTCTGTCATGCCCTCCAAGAGAATTTGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGTTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGTTCATTGTGTTTTGACACCGATCATAATACTAACAGATACAAGCAGTTGCAAGAAGCAGCTTTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACTGTGTTGGACATAAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTCCAAGATGTTCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAATGTACTTGAATCTTGTTTGGATTGGTGGGATGTTGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCATGAGATGCTCAAACTAAAGGGGTGGCTTTCTTCCCAAATATTCAAAGAGCTGTTTCCAGCTCATTTTGCTGAGGTAATTGATACTCTACCAGTTCAAGAATACATGCATCCCTTGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCCCATGGGAGTGCAAAACATGATATTGGACCATATCTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGACCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAATTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGGTACTGAGGAGCCACAAGAACAAAAAGTGAATGGAATGAAATTATTGCATGTTGAAGAAACGGAGCAAAGAGGCTTGCAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAACTGAAGCTAAAAGAGTTTCTAGTCAGAGCATGGACAGCAATGTTTCCCAGAATGGAGACTGTGATTTATGTTCTGAATCTGATTCCGGACGCACACTACTTCTCCTTGGGACTGTTCAAACCAATGAAATCTCTAAACAAGATATTCCCAGAAAACCCTTTGAAAGCTCAAAAAGACATAAAAATAAGTTTTCTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCGAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTTGTACCCGTGACCATCACAAGAAGATGGTTCACCCAATTCTAGATCAGAACATTTTTCTTGATAGTACTCACAAAAAGAGACTAAAGGAGGAATTTAAGATTGAACCTTGGACTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACAGAGGGTATCCAGTTGATTGATGAGGTCAGAATATTGCCTGAAGAGCATAAAGCAAAAGCAGACATGCTGGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACAGCAATTAAAGAAGTACGTCAACTTACAAGCAAAACATGA 3081 0.4242 MTKKPKAEGAEEPLPDHLRCGRTDGRQWRCRRRVKESLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSDEEPSAVDNVESRARRTSRIVKKKRRLSESPESPVAATPSLAKKKAPKQGDMQLELIRMVLKREAEKKNKNNKGKKKNKKKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHCDVKVGVDSRTVTPRYFRSKNVDRVPAGKLQIAPYGSNLKKGTKGKRKKCHWCQRSESCNLIQCSSCEREFFCMDCIKERYLDTQNEVKKACPVCRGACTCKDCSASQCKDSESKEYLTGKSSVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCLELSQGKASGEINLSAFSRLDKMKSSSASESQTLDEKPISSDTSILTEWTNCNGIDTLSCPPREFGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWDVEINIRQYFTGSVKRRPQRNTWHEMLKLKGWLSSQIFKELFPAHFAEVIDTLPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYLYISYGSADKETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIGTEEPQEQKVNGMKLLHVEETEQRGLQSMVEEGMNFFRRVNRTSCISTEAKRVSSQSMDSNVSQNGDCDLCSESDSGRTLLLLGTVQTNEISKQDIPRKPFESSKRHKNKFSEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSCTRDHHKKMVHPILDQNIFLDSTHKKRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIQLIDEVRILPEEHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1742 1026 Pfam WRC 15 56 IPR014977 -
Vra7g1742 1026 Coils Coil 132 163 - -
Vra7g1742 1026 MobiDBLite consensus disorder prediction 49 86 - -
Vra7g1742 1026 ProSiteProfiles JmjC domain profile. 676 989 IPR003347 -
Vra7g1742 1026 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vra7g1742 1026 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Vra7g1742 1026 SMART cupin_9 657 989 IPR003347 -
Vra7g1742 1026 Gene3D Cupin 549 998 - -
Vra7g1742 1026 MobiDBLite consensus disorder prediction 49 163 - -
Vra7g1742 1026 Pfam JmjC domain, hydroxylase 874 967 IPR003347 -
Vra7g1742 1026 MobiDBLite consensus disorder prediction 1 26 - -
Vra7g1742 1026 PANTHER PROTEIN B160 11 1025 - -
Vra7g1742 1026 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1025 IPR045109 GO:0032454|GO:0033169
Vra7g1742 1026 MobiDBLite consensus disorder prediction 139 154 - -
Vra7g1742 1026 SUPERFAMILY Clavaminate synthase-like 556 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1742 Vra-Chr7 36189299 36195517 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra7g1742 JmjC 1.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1742 K15601 - gmx:100810673 1713.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1742 7 36189299 36195517 Vra10g1387 10 19122277 19128325 PCT