Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1739 ATGGGCACGATCACTGCACCCAAATATACAAACTTTCTGCTCCTTCTCTTCTTTCTCTTCTGTTTTCATGCCTCCTTCTCTCATGCTGCCAATTCCCTGACACCAGACAAAGAAATCAGAGACAACAACAATGGTGCTGACAACTTGGTGTCAGAAGACCTCAGCTTTGAAATGGGTTTCTTCGGTTTTGATAGCTCTTCAAGGTACGTTGGGATTTGGTACCACAATTTTTCTATTTCAGCTACGGCATTCATATGGGTAGCAAATAGAGAGAAACCCATCATGGGAAGAGGAGGTTCCATCAAAATCAAAGGTGACGGAAACTTGGTTGTTTTCGATGGAGAGAACAACGAGGTGTGGTCAACTAACAAGTCTATATCGACGAACAACACAAAAGCTGTTCTTGATAAAGACGGGAACCTTGTTCTTTCAGAAGAATCAGAACATGAGAAAAAGGTGTGGCAAAGCTTTGAGAATCCAACTGATACCTTCGTGCCGGGTATGTCCCTACCAATTAATGCTGGAACGAGTTTGTTCAGGTCGTGGAAATCAGCAACGGATCCTTCACCGGGAAACTACTCAATGGGGGTTGACTCTGGGGGATCAACTATACAGATTTTGATTTTGGATGGGGAAAAAAGGAGGTGGAGAACTGGGTATTGGGATGGTAGAGTATTCACTGGTGTCTCTAATATGACAGGAAGCTCTCTTTTTGGTTTTAAACTTAATGAGAATCGGTTTACATATACATGGAATGAAACTGAAAAGGTGAGGTTTCAGATAACCTGGGATGGGTTTGAAAAGAAGTTTATATCGAATGAAGAGGAGACACAATGGAATAATACACAACACGAGCCTTATAATAAGTGTGAGCATTATAATTTTTGTGGCAATTTTGCAGTGTGTGATATCTCTAAGACATCTGTTTGTACTTGCTTGCATGGGTTTCAACAAGGGGAATTGAGTGAGTGGAATGATGGAAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAACTGAGGTTAATGTTGGTGAGGATGGTTTCTTCGTTCAAAGCTGTACAAAGTTGCCAGATTTTGCACGTTTGGAGAGTCCTTCTAACGATGAGGAATGCCAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCATATTCATATACAATTGGAATTGGGTGCATGATTTGGTATGTGGACTTGGTCGATGTTCAACACACCGAAAATGATATTGGAAGTGTACTCAACATCCGTCTTGCTGATTCTGAGTTAGTAGCAAGCGAGGGAGAGAAGAAGTCCAAAACTTGGATAATAATAATAATAACTGTTGTGGTGGGGCTGATCTGTCTTGGGATTTCTGTATTGCTGGTATGGAGGTTTAAGAGAAAACGTGAAGCTTCCCCGGCTTCGGCTAACAACAATGGTGAGTTTTTTATCATTGATCCAACGAGGAGTACAGATTTATCGACAGAATTTTCAGGATCAACTGAGTTAGGTTTGGAAGGGAATAAGGCAGAACTTCCATTGTTCACTTTGAGCTTCCTTGCAGCAGCAACAGAAAATTTCTCCGAAAAAAATAAGCTGGGACAAGGGGGATTTGGTCCTGTATACAAGGGGAAGCTTCCAGGAGGAGAGGAAATAGCTGTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGATTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAGCATAGAAATCTGGTTAGACTACTTGGATGTTCAATTCAGGGAGAAGAAAAAATGCTGGTATACGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCAGTGAAGAAAACGCAACTAGACTGGACAAAGCGCTTTGAAATAATTGAAGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTTAAAGCAAGCAACATTTTATTAGATGAAAGCATGCATCCAAAAATTTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGCAAGCACAAACAGAGTGGTTGGTACATATGGCTATATGTCGCCGGAATATGCAATGGAAGGTCTCTTTTCAGTTAAATCTGACGTCTACAGTTTTGGTGTATTACTACTAGAGATTATGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGAAGATTCAAGTCTCATAGGATATGCCTGGCACATGTGGAGTGAGCAGAGAGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATTCATACACATAGCAATGTTATGTGTGCAAGACTCAGCATCTCGCAGACCAAACATGGCCTCTGTATTGTTAATGCTGGCAAGTGAAGACACAACTCTTCCTCTGCCTAAACAACCTTTGGTCACTGTTTCCATGAGGAAATTTGATGATGGAGATCAATCTTATAGCGAAGGCCTTGACGTGTCAAACGATTTGACAGTTACAATGGTGACAGGGAGATAA 2538 0.4137 MGTITAPKYTNFLLLLFFLFCFHASFSHAANSLTPDKEIRDNNNGADNLVSEDLSFEMGFFGFDSSSRYVGIWYHNFSISATAFIWVANREKPIMGRGGSIKIKGDGNLVVFDGENNEVWSTNKSISTNNTKAVLDKDGNLVLSEESEHEKKVWQSFENPTDTFVPGMSLPINAGTSLFRSWKSATDPSPGNYSMGVDSGGSTIQILILDGEKRRWRTGYWDGRVFTGVSNMTGSSLFGFKLNENRFTYTWNETEKVRFQITWDGFEKKFISNEEETQWNNTQHEPYNKCEHYNFCGNFAVCDISKTSVCTCLHGFQQGELSEWNDGNSGGCKRRTPLKAERNSSGTEVNVGEDGFFVQSCTKLPDFARLESPSNDEECQRFCLQNSSCTAYSYTIGIGCMIWYVDLVDVQHTENDIGSVLNIRLADSELVASEGEKKSKTWIIIIITVVVGLICLGISVLLVWRFKRKREASPASANNNGEFFIIDPTRSTDLSTEFSGSTELGLEGNKAELPLFTLSFLAAATENFSEKNKLGQGGFGPVYKGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKMLVYEYLPNKSLDCFLFDPVKKTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLKASNILLDESMHPKISDFGLARIFGGNQNEASTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTEDSSLIGYAWHMWSEQRVMELLDSSIGDSTPKSKALRFIHIAMLCVQDSASRRPNMASVLLMLASEDTTLPLPKQPLVTVSMRKFDDGDQSYSEGLDVSNDLTVTMVTGR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1739 845 CDD PAN_AP_plant 350 426 - -
Vra7g1739 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 188 IPR036426 -
Vra7g1739 845 Pfam S-locus glycoprotein domain 216 318 IPR000858 GO:0048544
Vra7g1739 845 SUPERFAMILY Protein kinase-like (PK-like) 512 822 IPR011009 -
Vra7g1739 845 SMART blect_4 40 160 IPR001480 -
Vra7g1739 845 Pfam D-mannose binding lectin 84 182 IPR001480 -
Vra7g1739 845 CDD STKc_IRAK 534 798 - -
Vra7g1739 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vra7g1739 845 Gene3D Phosphorylase Kinase; domain 1 493 603 - -
Vra7g1739 845 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Vra7g1739 845 ProSiteProfiles Protein kinase domain profile. 528 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1739 845 Gene3D - 26 157 IPR036426 -
Vra7g1739 845 CDD B_lectin 49 160 IPR001480 -
Vra7g1739 845 ProSiteProfiles Bulb-type lectin domain profile. 30 156 IPR001480 -
Vra7g1739 845 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 10 845 - -
Vra7g1739 845 PIRSF SRK 3 845 IPR024171 GO:0004674
Vra7g1739 845 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 10 845 - -
Vra7g1739 845 Pfam PAN-like domain 352 410 IPR003609 -
Vra7g1739 845 SMART ntp_6 351 425 IPR003609 -
Vra7g1739 845 Pfam Protein tyrosine and serine/threonine kinase 531 795 IPR001245 GO:0004672|GO:0006468
Vra7g1739 845 ProSiteProfiles PAN/Apple domain profile. 351 426 IPR003609 -
Vra7g1739 845 SMART serkin_6 528 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1739 Vra-Chr7 36117730 36121799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1739 516 840 Receptor kinase-like Gene Family AT4G11530 57.530 2.63e-129 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra7g1739 PK_Tyr_Ser-Thr 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1739 - - gmx:100786721 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1739 7 36117730 36121799 Vra7g1739 7 36117730 36121799 ECH
Vra7g1739 7 36117730 36121799 Vra10g1401 10 19214464 19218415 PCT
Vra10g1398 10 19199194 19202596 Vra7g1739 7 36117730 36121799 PCT