Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1731 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCTGTAATCCTCTCTTCCGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGCTAGACGCAGGCTACAGAACATGTCCAATTACCAAGTTGCCCCTCCCCGACCAACCTTCCCTTATTCCCAACCACGCGCTCCGAAGCTTAATCTCCAACTATACCCTCCTACCCCCTCTTCACCAAACCATTTCCCAACCTCAAACCCTAATTTCCACCCTCACTTCTCCCTCTTCTTCCTCCGATTCCAAAATCGATTCCCTCCGCCACCTCACGCGCCTCTCCAAGCGTGACTCCGCCTTCCGCCGCCACCTTGCTGACTCAGCTGCTGTCCCTGCCGTCCTCGCCGCCGTCGTCGACCCTGCTCTCCAGGAGAAGGCGCTCCCGCTTCTGCTCAACCTCACCCTCGACGACGACTCTAAGGTTGGCCTCGTCGCCGAGGGCGTCGTCGCGCGCCTCGTCGCCGTTCTCCTCAACGCGCCGCCTGACTGCCGCGCCGTCGCGGCCACCATCGTCACCAGCCTCTCCGTCGTCGAGGTCAACAAGGCCACCATCGGCGCTTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATACTCCGTGACGGAAAAGGGAGGGAGAGAAAGGAGGCCGCCACCGCGCTTTACGCGCTCTGCTCCTTTCCGGATAACCGGAGAAGAGCCGTGAGTTGCGGCGCTGTGCCGATTCTGTTGCGGAACGTAGAAATTGGATTGGAACGGTGCGTTGAGGTAATTGGCGTTCTGGCGAAGTGTAAGGAAGGGAGGGAGGAAATGGAAGGTTATAACGGTTGTGTTCAGATTCTAGCTCGCGTTTTGAGGAACGGCAGCTCCAGGGGGATTCAGTATGCGCTTTTCGCACTTACTTCACTTTGCTTGTATAGCCAGGAAATGGTGCTGTTAGCTCTTGAAGAAGGTGTTCTGGAAGCTTCTTTTGTGTTCGTGGAAGATGATAATGAGAAGGTAAGGAGGAATGCGTGTAATTTGATTCGGGCTCTCCGTAGCAACAACAGCAACCACGATCGGGTGGAGTGA 1107 0.5655 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDQPSLIPNHALRSLISNYTLLPPLHQTISQPQTLISTLTSPSSSSDSKIDSLRHLTRLSKRDSAFRRHLADSAAVPAVLAAVVDPALQEKALPLLLNLTLDDDSKVGLVAEGVVARLVAVLLNAPPDCRAVAATIVTSLSVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLRNVEIGLERCVEVIGVLAKCKEGREEMEGYNGCVQILARVLRNGSSRGIQYALFALTSLCLYSQEMVLLALEEGVLEASFVFVEDDNEKVRRNACNLIRALRSNNSNHDRVE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1731 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Vra7g1731 368 PANTHER U BOX DOMAIN-CONTAINING 2 362 - -
Vra7g1731 368 SUPERFAMILY ARM repeat 87 364 IPR016024 -
Vra7g1731 368 SUPERFAMILY RING/U-box 5 74 - -
Vra7g1731 368 CDD RING-Ubox_PUB 10 51 IPR045210 -
Vra7g1731 368 Gene3D - 81 207 IPR011989 -
Vra7g1731 368 Gene3D - 208 367 IPR011989 -
Vra7g1731 368 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vra7g1731 368 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vra7g1731 368 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 362 - -
Vra7g1731 368 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1731 Vra-Chr7 35993776 35995420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1731 6 357 U-box Gene Family AT4G21350 59.780 3.09e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1731 - - gmx:100785141 534.258