Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1729 ATGGCTGAAGAGTTTCAAGCTAGAATTTGCGGTGAAAACTGGTGGAGTAGTTCTATCGATTCAGCAAGAAGTGTATTTCCTGTAAGCTCATCACCTATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGTTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACCTACCTGGGTTTTTCTGATGCACACAAGTCACCCAAGACTGAATCAGCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCGCATCTTCAACATCAGACAATTGGAATCAACATCTATTAGTTCGATGCAATGGAAGGGCAGAGAGCAATTTTGATTCCAAGCTTCGGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGGATTGGAACCCGAAGAGCTTCTCCTGTACTGGTGGAGGAGACCAACAAATTGATAATTTCAAGCCATTGAACCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGATAACCAGGAATGGGTTATCATCAAATCGTGATTTTGCAATTGGATCATCCACATATGGTAACCCTTCAACGTTAAGAAGCTTATATGAACCTGATCCTGATCCACAATTACCACAGCACTCACTTTTCACCAACCGTTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTGAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGACTGCTTCCGCCGACGCACTTCACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAATCGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTCAACAGTGAAGAAACTCTAGATTCAGCAACAATGGCGAAGAAAGATGCTTGTGAACCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAACCGCAGCAGGTGTGTGATGATCTGAAAGAGTCAGAAGGAGCACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCAGTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTCTTGAGGTAG 1425 0.4372 MAEEFQARICGENWWSSSIDSARSVFPVSSSPIASSPCSVAAHNDAGIYSTRQTDLKATKCCVEETNNLLSNTYLGFSDAHKSPKTESARGSDSLLIDSTLQMMGFGLASSTSDNWNQHLLVRCNGRAESNFDSKLREETGIDSSNSQIRRDWNPKSFSCTGGGDQQIDNFKPLNQEFSVDYQNLCSITRNGLSSNRDFAIGSSTYGNPSTLRSLYEPDPDPQLPQHSLFTNRSMSYSSKASYGTPCTELTPTWSKVTTFLKPTTIAKQHPIGLHFSNNTTFWTASADALHDIRAGTFASSQSQYQSPTFDQEKPNCPSTLLNKLNSEETLDSATMAKKDACEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQPQQVCDDLKESEGAHEDLKSRGLCLVPISSTFPVATETSSSAELWTPTFRGALLR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1729 474 PANTHER TRANSCRIPTION FACTOR BHLH123 102 461 - -
Vra7g1729 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 417 IPR036638 GO:0046983
Vra7g1729 474 CDD bHLH_AtbHLH_like 357 408 IPR045239 -
Vra7g1729 474 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 461 - -
Vra7g1729 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Vra7g1729 474 Gene3D - 361 420 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1729 Vra-Chr7 35934964 35938710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1729 333 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 63.194 4.65e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1729 - - gmx:100784084 682.174