Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1723 ATGGAAGGAGGCGACGATCTCCACCACCATCATCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTCGAGAAGAAAGAAGACCAAGAAGCCGCCTCATGCTCCACCTCCTCCCCCTACCCTTCACTAGCAATCTCCGCGGAACCCACCACATCCAATTCCACCCGATCCAACCAGCTCGCGGCGCCGTCGGACCCTCCAAACAGACAAAAGCCCCCACCCAAACGCACGTCGACCAAGGACCGGCACACAAAGGTGGATGGTCGTGGCCGCCGCATCCGAATGCCCGCTCTCTGCGCCGCTCGCGTCTTCCAACTCACGCGCGAACTCGGTCACAAGTCCGATGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCGTCATCGCCGCCACCGGGACCGGAACCATCCCCGCCAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACACCAACCCCACCAACACCTCCACACTTCTCAATTTCCAATCCAACAACCTCAACACCTCCATGCTCCAGGCGAAGCCCGAAGCTCCCTCCTCCACCTTGGACTTGTCCGACACAAGCGCGGAGGAATCAACCCTAGGCCGGAAAAGAAGACCGACGGAACAAGACCTATCCTCCTCCTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAGTGCAGGCACGATTCCTGCGAGTCACGCCGCCAACATATGGATGGTGGCCAATTCAAACACCAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGTGCCTTGTATAGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTCCCCACGCCCATGGCACTTTTGCCGAGTCAGCAACTGGGGTCTTCTGGGATTGGTGCTGTTGGGGGAAGCAGTAACAATAATAGTAATAACAACGGCAATAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTCAGTCCTTATCGTCCAGTTATCGGCGTTTCTGAATCTCAGGCAAGCGGCTCGCAATCGCATCGTGGAGGTGCCGCAGATGATCGCCATGATACCACCAGTCACCACTCCTAG 1197 0.5714 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPTTSNSTRSNQLAAPSDPPNRQKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNPTNTSTLLNFQSNNLNTSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDLSSSSQHQMGSYLLQSSAGTIPASHAANIWMVANSNTNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNSNNNGNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGAADDRHDTTSHHS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1723 398 MobiDBLite consensus disorder prediction 213 229 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 17 31 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 373 398 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 230 244 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 32 65 - -
Vra7g1723 398 Pfam TCP family transcription factor 77 245 IPR017887 -
Vra7g1723 398 MobiDBLite consensus disorder prediction 333 356 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 74 90 - -
Vra7g1723 398 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 10 397 - -
Vra7g1723 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 397 IPR005333 GO:0003700
Vra7g1723 398 MobiDBLite consensus disorder prediction 1 90 - -
Vra7g1723 398 MobiDBLite consensus disorder prediction 213 252 - -
Vra7g1723 398 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
Vra7g1723 398 MobiDBLite consensus disorder prediction 384 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1723 Vra-Chr7 35823276 35825999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1723 70 392 TCP Transcription Factor Family AT3G47620 44.762 7.34e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra7g1723 TCP 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1723 - - pvu:PHAVU_003G190900g 702.59