Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1722 ATGGGATCAGAGGGTGTGGCTCCTGCAGTTGTTGGGACATCAAAAAGCAGGTCTTCTTCTGGTAAAATGAACCAAGGGAAAGTCCCCAGAAAAATTCACAAGGCTGAAAGGGAGAGAATGAAACGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGAAGTGAATGAGAACAGTGGAAAGGCTTCTATATTGTGTGAAGCGGCTAGGTTGCTAAAAGACTTGCTCTCTCAGATCGAGTCCCTCAAGAAAGAGAATGTCACACTGTTGTCTGAATCTCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGTCTAGAAACTCAAATTGAGAAACTTCAAGGAGAGATACAGGCAAGAGTTGCTCAATCTAAACCTGATCTGAATGTACCTCCCCATTTGGAACTTGAGCCACTGGAGCAGGCAAATTTTCCAGGACAGAGTCTCCAATTGCATACTATGGAACCTAACTTGCAGCAAGGATCTGCAGTTTTGCTTGTCCCTTTTCCCGATCTTCAAGCTTCGTTTCCAGCTCCTAATGTTAGCGAAGTAGCTCCAAATTCTACTTCTGTTGTCAGTAAACCACATGCAAGGTATCCCACAGCAGCAGATTCATGGCCATCACAGCTGCTTGGATAG 660 0.4379 MGSEGVAPAVVGTSKSRSSSGKMNQGKVPRKIHKAERERMKREHLNELFLDLANALEVNENSGKASILCEAARLLKDLLSQIESLKKENVTLLSESHYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNVPPHLELEPLEQANFPGQSLQLHTMEPNLQQGSAVLLVPFPDLQASFPAPNVSEVAPNSTSVVSKPHARYPTAADSWPSQLLG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1722 219 MobiDBLite consensus disorder prediction 187 202 - -
Vra7g1722 219 Coils Coil 75 95 - -
Vra7g1722 219 Gene3D - 21 95 IPR036638 GO:0046983
Vra7g1722 219 MobiDBLite consensus disorder prediction 184 219 - -
Vra7g1722 219 PANTHER TRANSCRIPTION FACTOR BHLH47 10 218 - -
Vra7g1722 219 MobiDBLite consensus disorder prediction 1 39 - -
Vra7g1722 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 105 IPR036638 GO:0046983
Vra7g1722 219 Coils Coil 103 123 - -
Vra7g1722 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 78 IPR011598 GO:0046983
Vra7g1722 219 PANTHER TRANSCRIPTION FACTOR BHLH47 10 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1722 Vra-Chr7 35803925 35806449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1722 7 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 48.498 3.55e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1722 - - vun:114176257 411.379