Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1717 ATGGGAAATTTCTGTGCTCGGTGCAAGATTGATGGCAATTTGAATCCGCACCCATGTTCTGAAGTTCCCAATAGAAGCACCCAGTTGTTTGTTCATTCAAATCCAAACGGGTATGGATACATTGATGGAGGGAAACCTGAGATTCTCCCTACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAACCCTTCACATTATATGATCTTAAGAAGGCCACAGGAAATTTTCAGCCTTATAATCTTATTGGAGAAGGAGGATTTGGGAATGTTTATAAGGGGAGGATTAATGAATCTAAATCCCACGGGGCTACAATTTATGGATCTGGAAGAGATGTAGCGGTTAAGAAGCTTAAGCCTGAAGGCTTTCAAGGGCACAAGGAGTGGCTGTCTGAAGTCAATCATCTTGGCCAACTTCACCACCAGAATCTCGTCAAACTTATTGGATACTGCGTCGAAGGAGATAACCGACTTCTAGTGTACGAGTACATGCCCAACGGATGCTTGGAAGATCATATATTTTGCAAAGGCACACAACCACTTCCCTGGGCTACAAGAATCAAGATTGCCACGGGTGCTGCTCGAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAACATTTTGATAGATTCGGAATTTAATGCAAAACTGTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTACGTTTCCACTCAAGTTCTGGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACGTCAAGGTGTGATGTGTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGGCATGCTATTGATAACACAAAATCTGGAGTGGAACGTAATCTGGTAGAATGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGATACCAGGTTAGAAGGACAATACCCGCAGAAGGCAGCTTATACAGTTGCAATAATTGCGTTACAGTGTATTTCTGATGCAAAGACTAGGCCACAAATGTCTGAGGTTTTGTCTGCCTTGGAACACCTACCAGTCACTAGACGTTCAGCTAGCCCCACATAA 1119 0.4406 MGNFCARCKIDGNLNPHPCSEVPNRSTQLFVHSNPNGYGYIDGGKPEILPTPRSEGDILSSPHLKPFTLYDLKKATGNFQPYNLIGEGGFGNVYKGRINESKSHGATIYGSGRDVAVKKLKPEGFQGHKEWLSEVNHLGQLHHQNLVKLIGYCVEGDNRLLVYEYMPNGCLEDHIFCKGTQPLPWATRIKIATGAARGLSFLHDSKQQIIYRDFKASNILIDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVERNLVEWARPYLGDRRKLFRIMDTRLEGQYPQKAAYTVAIIALQCISDAKTRPQMSEVLSALEHLPVTRRSASPT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1717 372 CDD STKc_IRAK 85 362 - -
Vra7g1717 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vra7g1717 372 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Vra7g1717 372 ProSiteProfiles Protein kinase domain profile. 79 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1717 372 PANTHER OS01G0588500 PROTEIN-RELATED 40 365 - -
Vra7g1717 372 Gene3D Transferase(Phosphotransferase) domain 1 166 369 - -
Vra7g1717 372 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Vra7g1717 372 Gene3D Phosphorylase Kinase; domain 1 51 165 - -
Vra7g1717 372 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Vra7g1717 372 PANTHER BNAC02G17010D PROTEIN 40 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1717 Vra-Chr7 35763923 35768187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1717 67 362 Glycoside Hydrolase AT3G07070 52.333 5.73e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g1717 PK_Tyr_Ser-Thr 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1717 - - pvu:PHAVU_003G191400g 673.315