Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1715 ATGGCAAATTCTGCTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGTGGTGCTATGCGTGTTGATTTCCATGCTCCAACTCTTACTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCTCGTGTGCCGACAACAGAACCAAAATCTCTCAGTGCCCTGACTCAGAGAAGCGGTGCGGAGTCCAGTATTCCGATTTCTTTCAAGCCCCCATGTGCGCCATTCCCAACCCCGTGGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAATCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCTGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACTGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAGAACCTCAAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAATCTCCCCATTTATTATTTACAAACGAACTGCTCAGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCCGACAGGAGCAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCATAGAGGTAACTCAGAGGGACAAGTCAATGAGATAGTTTCAGCTTTTGACTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCGTCAGGACGCAGGATTTACTGCCAATGCATTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCTGGAACCAAAATAATTTTGGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGTTTGACATATCTTCTATCGTGGGCGCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCACGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGTAAGAATATAACTATTGAATTTATTCATCTTCGGATTTACCCATTTTCTTTGATGCTTTTGACTTTATTCTCAGGATTAAAAATCTTTACAGTCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTACAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACTGGGTTATTAGGTGGCTTTCTTTTCCGATTCTTGGTTGAAAATACATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCATTCCAGGGAATAGAAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATTGTGATGTTTTTTGCTGCCTTCTACATTGATCAAGTTTTGTCGTCAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTAATCCAAGAGAAGGAGAAAGTGGAGGAGCTTCTACTTGAACCAACTATTAATCATGCAATTCTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATTAATATGATGATTGGTCTCACAAAACCAACCTCTGGTACTGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGTGTATGCCCACAACATGACTTGCTGTGGGACAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAGAGGCTCAGTCCTAACACAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAATTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAATGTTATGGAGTGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAAATGGCAGCTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTGACAGTGACGACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGGCAATAAGATATACCATCTGTCAGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCAAATCAGGCTCAGGCATTTGATACCTTCTCATAA 2922 0.411 MANSASASFFTQAKALLLKNITFQKRNVKTNVRLILFPVVLCVLISMLQLLLDTQLDKSKFKCGCSCADNRTKISQCPDSEKRCGVQYSDFFQAPMCAIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLGSESEPQRNNFIEPAFSSNLPIYYLQTNCSGTENSGFSFPSPTGANNEIKCALAKNLWRNSSTDINSELYKGYHRGNSEGQVNEIVSAFDFLNSNGNRYNVGIWYNSTYRQDAGFTANALLRIPRSVNLISNSYLQFLLGPGTKIILEFVKEMPKPETIFRFDISSIVGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVTSVIYMLCFVIFGSLLGKNITIEFIHLRIYPFSLMLLTLFSGLKIFTVNDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFRFLVENTSFPRGWIILMELYPGFALYRGLYELAQFSIPGNRRGTDGMKWHNLSESTNGMKEVLIIMFAEWIVMFFAAFYIDQVLSSGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVCPQHDLLWDSLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKIVYMDEPSSGLDPASRKMLWSVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNGNKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFTVSAWGLVDTTLEDVFIKVANQAQAFDTFS* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1715 973 Gene3D - 643 916 IPR027417 -
Vra7g1715 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 888 IPR027417 -
Vra7g1715 973 SMART AAA_5 681 865 IPR003593 -
Vra7g1715 973 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 888 IPR003439 GO:0005524
Vra7g1715 973 Pfam ABC-2 family transporter protein 262 584 - -
Vra7g1715 973 CDD ABC_subfamily_A 655 876 - -
Vra7g1715 973 Pfam ABC transporter 676 817 IPR003439 GO:0005524
Vra7g1715 973 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 423 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra7g1715 973 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 444 972 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra7g1715 973 ProSitePatterns ABC transporters family signature. 790 804 IPR017871 GO:0005524
Vra7g1715 973 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 7 423 - -
Vra7g1715 973 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 444 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1715 Vra-Chr7 35738252 35757719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1715 660 899 Calmodulin-binding Proteins AT2G36910 24.696 2.01e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1715 - - vra:106769009 1927.14