Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1711 ATGGAGCTTGCTTCCGAGAGATCTGGTGACGGAGGAGGAAGACTCAAGGAAGAAAACAGAACTGATGAGTATACTGTTGGTGATGATGAAGATGGTCCTCGTAGACAAGAAATTATTCTAGAGGAACCACCCATAGAGGAGGCTGGACCAAGCACATCAGCAGACAAAAAGGAAGAGGTTGATGATGAACTTGAGAGCACGAAAAGTGAAATGGGTGTGGTTAGAGAAGAAAATGAACGGTTAAAGAGGTCTCTGCAGAAAATAATGAATGAGTATCGGACACTGGAAATGCAATTTCAAGACATACTTAAGCAAGGGACAAAAAGGAAAAATGGTAACGAAGAAGACGACACAGTAGAGGAATCGGATCTAGTTTCTCTGAGCCTAGGAAGAGTTCCAAGCCATCAAAGAAACGAAGAGAAAATAAAGGTTTATAAGACATTGAAGGATGATGAAGGGTTTAACCAAGAGTTGACTCTTGGACTAGAGTGCAAATCAAAGTCAAGAAGCACAAGTGAAGCTTTGCCCAATCCAAGCCCAGAAAACAGTTCTGAAAATCGAAAGGAAGAAGCTGGGGAGACACAGAAGGCAATTAGGGACACAGAGGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGTCCAGTAAGAAAACAGGTGCAAAGATGTGTCGATGACATGTCCATTTTAATTACGACGTATGAAGGGACCCACAACCACACTCTTCCACCTTCGGCTACTGCCATGGCATCCACAACTTCTGCAGCAGCCTCCATGCTTCTTTCTGGTTCATCAACCTCTCTCTCTGCCTCAGCACCCTCAACAACAGCACCCACTTCTGCTTCCAATCTCCACGGCCTCAATTTCTATCTATCAGATGGTGCAAAACCAAGGCAATTATACCTGTCGAACCCTGCACTGTCGTCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCTTCCTCGTCACCCTTCGTTAGATTCACTTCAAACTACAACCAACCCAGATACCCATCTTCCTCAAGCCTAAGCTTCAGTAATTCCTCAGAAATCAACGCATTGTCTTGGAGCAATGGCTTCCTTACCAATAATAATACTATTCAACCTACATACAATAGCAGGAACATACTTGGGAATGTAAACTTTGGGAGGCAACAAGTGGAAAATATATACCAATCCTATCTGCAAAAGAACAGCAGCAATATTCCAAGCGTTCCTCAAGGTGGTGTACCGGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCAGACCCCACTTTTCAATCAGCTTTGGCAGCAGCGCTCACTTCGTTTATTGGTGGCGGTGTTCGAGGAAATCAAGGCGGTAACAGTGTTGGTGAAAATCCAAGTTCGGGTCAGAACTTGAAGTGGGGTGAGGTGTTTGCAGCGTCTAATAATTCATCTTCTACCTTGTCTTGTTCAACTTCGAAAGTCAATGGTTGTGCATCGAGCTTCTTGAACAAAACGCCAGCGAATAATACACAGACGAAAAGTTTGGTGTTTCTACCGCCGTCGTCTTTGCCGTTTTCTACCCCCAAAAGTGCATCTGCGTCTTCTCCTGCTGATAATAGCGACACCACCAATTAA 1767 0.446 MELASERSGDGGGRLKEENRTDEYTVGDDEDGPRRQEIILEEPPIEEAGPSTSADKKEEVDDELESTKSEMGVVREENERLKRSLQKIMNEYRTLEMQFQDILKQGTKRKNGNEEDDTVEESDLVSLSLGRVPSHQRNEEKIKVYKTLKDDEGFNQELTLGLECKSKSRSTSEALPNPSPENSSENRKEEAGETQKAIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSLSASAPSTTAPTSASNLHGLNFYLSDGAKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFTSNYNQPRYPSSSSLSFSNSSEINALSWSNGFLTNNNTIQPTYNSRNILGNVNFGRQQVENIYQSYLQKNSSNIPSVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGENPSSGQNLKWGEVFAASNNSSSTLSCSTSKVNGCASSFLNKTPANNTQTKSLVFLPPSSLPFSTPKSASASSPADNSDTTN* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1711 588 MobiDBLite consensus disorder prediction 1 42 - -
Vra7g1711 588 ProSiteProfiles WRKY domain profile. 222 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1711 588 SUPERFAMILY WRKY DNA-binding domain 220 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g1711 588 MobiDBLite consensus disorder prediction 106 136 - -
Vra7g1711 588 MobiDBLite consensus disorder prediction 165 182 - -
Vra7g1711 588 MobiDBLite consensus disorder prediction 51 77 - -
Vra7g1711 588 Coils Coil 57 105 - -
Vra7g1711 588 MobiDBLite consensus disorder prediction 569 588 - -
Vra7g1711 588 Gene3D WRKY domain 212 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g1711 588 MobiDBLite consensus disorder prediction 1 77 - -
Vra7g1711 588 MobiDBLite consensus disorder prediction 183 209 - -
Vra7g1711 588 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 583 IPR044810 GO:0003700
Vra7g1711 588 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 45 583 - -
Vra7g1711 588 SMART WRKY_cls 227 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1711 588 Pfam WRKY DNA -binding domain 228 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1711 588 MobiDBLite consensus disorder prediction 357 376 - -
Vra7g1711 588 MobiDBLite consensus disorder prediction 165 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1711 Vra-Chr7 35704160 35708033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1711 32 497 WRKY Transcription Factor Family AT1G18860 40.111 3.55e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra7g1711 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1711 - - pvu:PHAVU_003G192000g 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0996 4 17085075 17087997 Vra7g1711 7 35704160 35708033 ECH
Vra11g1255 11 14939425 14941436 Vra7g1711 7 35704160 35708033 ECH
Vra7g1711 7 35704160 35708033 Vra7g1711 7 35704160 35708033 ECH