Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1701 ATGGCGGCTGGAAGGGCTTTTTCCGACATCACTGCCTTCCTTCGCAACCAAACAGCTCCTCCCACTTCCCAACCTCTCGATTCTCTCTTCCTCTCTTCTTCCACTGCTCCTTTTCTTGGTTCGAGATCCATGATGAGCTTCGAAGGAGAAGGAGGGAAGGGGTGTAACGGTTCCTTCTTCCGCGCGTTTGATATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCTGAGAAGAAGCGCCGTCTCTCTGCCAATCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGACCTTGGTCTGCAGCCACGACAAGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGCTGGAAGACCAAACAGCTCGAGAAGGACTACGAGCTTCTGCATGAGAGCTATGAGAGTCTCAAGGCCAACTACGAAATCCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGTGAGAAGGTGGTTGCAAGAGAGAAAGAAGAGGGGCAGTTGAAGCAGGCCGAAAGTGGAACAAAGAGGTTGCAGGAACAGGATCAGGAACCACACCAAAGGCCTGTACTTGATTCAGTTTCGGAAGGTGAAGGATCGAAAGTGTCTTGTGTTGTTGGGGGTTGCAAACAGGAAGATATCAGCTCAGCCAGGAGTGACATTTTGGACTCCGATAGCCCGCATTACACGGATGGAGTTCACTCGGCGGTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCGGACATGTCACAAGATGAAGAAGACAACCTGAGCAAGAATCTGTACCCTTCCTACCTCTTTCCGAAACTGGAAGATGCGGATTACTCCGACCCAACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGGTCTTTGGAACTGGGAGTACTAA 975 0.4944 MAAGRAFSDITAFLRNQTAPPTSQPLDSLFLSSSTAPFLGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYELLHESYESLKANYEILLKEKDKLKSEVAHLSEKVVAREKEEGQLKQAESGTKRLQEQDQEPHQRPVLDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKNLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHGLWNWEY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1701 324 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Vra7g1701 324 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Vra7g1701 324 SMART HOX_1 80 141 IPR001356 GO:0003677
Vra7g1701 324 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 324 - -
Vra7g1701 324 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Vra7g1701 324 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Vra7g1701 324 Coils Coil 136 201 - -
Vra7g1701 324 MobiDBLite consensus disorder prediction 181 211 - -
Vra7g1701 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 324 IPR045224 GO:0003700
Vra7g1701 324 Gene3D - 76 144 - -
Vra7g1701 324 CDD homeodomain 82 138 IPR001356 GO:0003677
Vra7g1701 324 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Vra7g1701 324 MobiDBLite consensus disorder prediction 181 220 - -
Vra7g1701 324 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Vra7g1701 324 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1701 Vra-Chr7 35605804 35607656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1701 21 255 Homeobox Transcription Factor Family AT3G01470 41.494 1.34e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g1701 Homeodomain 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1701 - - gmx:100799054 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1701 7 35605804 35607656 Vra7g1701 7 35605804 35607656 ECH