Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1682 ATGGAACCTCCGCTCGTCAACGACGCCACATTCTCTTCGGCCAACCCTTCTTTGTCCGAGATTTGGCCCTCGCAATTCCCCTCCTCCAACAAGAGACCCTCTTCTCTTCTTCTTCACAATCACTCTTCTAACAGTAACAAACACGTTAAGCTATCACCATCTTCAGAGACACACCAAAACGCTGCGTTGCGTCCTCTTCAACCCGACGCCACTTCCGTAGCTGCCGCCAACAGCTCACCCCTTCAAACTCCCAAACCCAAGCAGGACTACATACACGTCCGAGCAAGAAGAGGCCAAGCCACCGATAGCCACAGCCTCGCCGAAAGAGCTCGTAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGCTGTGGCAAGGTAATTGGTAAAGCGCTTGTCCTGGATGAGATTATTAACTACATCCAGTCTCTGCAGCGTCAGGTTGAGTTTCTTTCGATGAAGCTTGAGGCGGTTAATTCGAGATTGAGTATTAGCCCTTCTATTGAATGTTTTCCCACAAAAGAAGTTGCCACTCAGCCATTTGACCTTTCAGGAATAATATTTGGATCACAACCGGCAAGGGGATTTGCTCAAGGATCACAAGCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGAGAAAGTAACATAA 669 0.4798 MEPPLVNDATFSSANPSLSEIWPSQFPSSNKRPSSLLLHNHSSNSNKHVKLSPSSETHQNAALRPLQPDATSVAAANSSPLQTPKPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCGKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSISPSIECFPTKEVATQPFDLSGIIFGSQPARGFAQGSQAGWLHMQIAGGFEKVT* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1682 222 Pfam Helix-loop-helix DNA-binding domain 103 150 IPR011598 GO:0046983
Vra7g1682 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 149 IPR011598 GO:0046983
Vra7g1682 222 CDD bHLH_AtBPE_like 89 172 - -
Vra7g1682 222 MobiDBLite consensus disorder prediction 1 89 - -
Vra7g1682 222 Coils Coil 146 166 - -
Vra7g1682 222 Gene3D - 96 171 IPR036638 GO:0046983
Vra7g1682 222 PANTHER BNAC05G07950D PROTEIN 45 221 - -
Vra7g1682 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 167 IPR036638 GO:0046983
Vra7g1682 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 45 221 IPR024097 GO:0006355
Vra7g1682 222 MobiDBLite consensus disorder prediction 8 85 - -
Vra7g1682 222 SMART finulus 105 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1682 Vra-Chr7 35376645 35379764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1682 1 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.662 2.46e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1682 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1682 - - gmx:100799646 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1682 7 35376645 35379764 Vra7g1682 7 35376645 35379764 ECH