Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1680 ATGGTGTCAACACACGAGAAGAAGACGAACCTCGCCAGACTCATCATCCCTTCTTCTTCATCTTCCCCATCTCCATCTCCATCCATCACAAGCCCACATGTCATTCACAGTAGGTCCCACTCCTTTGTGGGCCCCTCCCCGCGCTTCAATCCCTCCTCAACCCCTCTCTTCTTCCTCCAAGAGGACGACGACGAAGACGAAGAAAAGGAACCTCTTTCTTCTGACCCTGTTAAGATTGGACCTTCCGATTTTCATATTCTCCGTGTTGTAGGGCAGGGTGCCTTTGGGAAGGTCTTTCTCGTCAGAAAAAAAGGAAATTGCTTCGATGGTGATGGTGATGGTGATGGTGATGGCGATGGGGTCTTCGCCATGAAGGTCATGAGAAAGGATACCATCATAAAGAAAAACCACGTTGATTACATGAAAGCGGAGAGGGATATTCTCACTAAAGTCCTTCACCCTTTCATTGTTCAGCTACGTTACTCTTTTCAGACCAATTCTAAGTTATATTTGGTGTTGGATTTTGTAAACGGAGGGCATCTCTTCTTTCATCTGTATCGCCAGGGTATTTTCAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCAGTTTCACATCTTCATAGCAAAGGCATCGTGCATCGGGATCTTAAGCCTGAAAACATTCTAATGGACTCTCATGGGCATGTCATGCTGACTGATTTTGGAATGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTCTGTGGCACCGTGGAATATATGGCTCCTGAAATTCTTCTGGCTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTATCCTGTTGTATGAAATGCTAACAGGGAAGGCACCATTTACACACACTAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCACTCATTACTCAAAGGATTGCTGCAAAAGGATCCAACAACAAGGTTAGGACATGGGCGAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCAGATGTGTCTGGGAAAGACTGTACTGATAATTTTGACAAATGTTGGACAGCAATGCCCCCTAATGACTCACCAGCATCCACACCTACAGCAGGTGGCCATTTCCAGGGCTATACTTATGTGGCACCCAACCCTTGGCTTTCATCTGGTTCACTACAATGA 1272 0.445 MVSTHEKKTNLARLIIPSSSSSPSPSPSITSPHVIHSRSHSFVGPSPRFNPSSTPLFFLQEDDDEDEEKEPLSSDPVKIGPSDFHILRVVGQGAFGKVFLVRKKGNCFDGDGDGDGDGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTNSKLYLVLDFVNGGHLFFHLYRQGIFSEDQARLYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIDELGRSNSLCGTVEYMAPEILLAKGHNKDADWWSVGILLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPFLTSEAHSLLKGLLQKDPTTRLGHGRNGDEQIKSHKWFRSINWKKLEARELEPKFKPDVSGKDCTDNFDKCWTAMPPNDSPASTPTAGGHFQGYTYVAPNPWLSSGSLQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1680 423 MobiDBLite consensus disorder prediction 1 57 - -
Vra7g1680 423 Pfam Protein kinase domain 84 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1680 423 SMART serkin_6 84 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1680 423 MobiDBLite consensus disorder prediction 13 57 - -
Vra7g1680 423 ProSiteProfiles Protein kinase domain profile. 84 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1680 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vra7g1680 423 Gene3D Phosphorylase Kinase; domain 1 82 394 - -
Vra7g1680 423 SMART pkinase_C_6 353 412 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra7g1680 423 SUPERFAMILY Protein kinase-like (PK-like) 69 397 IPR011009 -
Vra7g1680 423 Pfam Protein kinase C terminal domain 373 410 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra7g1680 423 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 419 - -
Vra7g1680 423 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 419 - -
Vra7g1680 423 Gene3D Transferase(Phosphotransferase) domain 1 176 371 - -
Vra7g1680 423 ProSiteProfiles AGC-kinase C-terminal domain profile. 353 420 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1680 Vra-Chr7 35352132 35357310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1680 16 413 AGC Kinase Gene Family AT3G08720 58.685 9.61e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vra7g1680 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1680 K04688 - gmx:100798259 717.227