Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1662 ATGGCATCATTTGCAGGCACCACCCAGAAGTGCACAGCTTGCGAAAAGAAAGTGTATTGGGTGGAACAGCTTACTGCTGACAACAAGGTGTACCATAAATCGTGTTTCAGATGCCACCACTGCAAGGGCACCCTCAAGCTGGGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGTGGTTGTGTAATTAGCCCATCAAATTATGTTGCCCATGAACATCTTCTCTATTGCAGACATCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGTCAATTAGTGAAGCATGAAAATCTCCAACTCACCACTCAAAACACCACACAACATCCAACTAATGGTACTGCAACTCCACCTCATCACTCTTCTTAG 525 0.4343 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRIARVERSADQVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHLLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQHPTNGTATPPHHSS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1662 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vra7g1662 174 SMART lim_4 86 131 IPR001781 -
Vra7g1662 174 SMART lim_4 10 62 IPR001781 -
Vra7g1662 174 MobiDBLite consensus disorder prediction 154 174 - -
Vra7g1662 174 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vra7g1662 174 PANTHER OS06G0237300 PROTEIN 1 93 IPR045268 GO:0051015
Vra7g1662 174 PANTHER OS06G0237300 PROTEIN 92 165 IPR045268 GO:0051015
Vra7g1662 174 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 93 - -
Vra7g1662 174 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 92 165 - -
Vra7g1662 174 Pfam LIM domain 11 65 IPR001781 -
Vra7g1662 174 Pfam LIM domain 93 135 IPR001781 -
Vra7g1662 174 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vra7g1662 174 Gene3D Cysteine Rich Protein 5 75 - -
Vra7g1662 174 Gene3D Cysteine Rich Protein 84 144 - -
Vra7g1662 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 145 - -
Vra7g1662 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1662 Vra-Chr7 35128101 35131380 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vra7g1662 LIM 7.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1662 K09377 - gmx:100792627 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1662 7 35128101 35131380 Vra7g1662 7 35128101 35131380 ECH
Vra7g1662 7 35128101 35131380 Vra5g0467 5 5068488 5071024 PCT