Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1647 ATGACTCCAAGGGATCGCCGCATCTTATCATTCCCGGCGGTTCACCCTTGCGGCGACATATCTCCGCCCACACTTCTTGCCTCTCTCATCACTCTCTCCCAATCCGTATGCAACTTTCAACCCCAATTCTTCCCTACTCAACGTCGCAACGCACGAGAAACGATACGCCAAATCGGTATACTCTTAGTTCTCCTTCAAGAAATTCGAGACCGCGGTTTATCAATCCCTCACTCCACCATCCTCTGCCTCGCAGAACTCCACTTCGCCTTGCAAAAAATCAACTTCTTGATGCAAGATTGCACACTCCAAGGCGCGCGCCTTTTAATGCTTTCCAAATCTCAACACGTCGCATCCCAGTTCCGCTGCCTCATTCGCGCCGTCGCCACCTCCCTCGATGTTTTGCCTCTTCAAGAGTTCGACGTGTGCGCTGAAGTCAGGGAATTGGCGGAGTTAGTAACGAGGCAAGCGCGGAAAGCCAAGTTCGAAGTGGACCCCAGCGACGCGCGAGCGTGCAAAACTCTCCACAATGTTCTTCGGCTGTTCGCGAGGGGAACGGAACCTGACCTCAGCTCCATGCAGGGAATCATCGACTACCTCCAAATTAGAACATGGACGGATTGCAATAAAGAGATTAGTTTTCTAGAAGAAGAAATCAGCTTAGAGTGTCGCGATCGTGACGAGCGAGAGGTTCCGTTGCTCAGTAGCTTGGTAGGGTTCTTAAGTTACTGCAGAGGTGTCATTTTCGAAACTACGGAAGACATTAATCAATCTGAAGGCAGATGCAGTACCGAGATGACTCCGTTAACGTTAACATTACTAACGTCCGTTAATCCAGAAGATTTCCGCTGCCCGATTTCCCTCGAGTTGATGACGGATCCGGTGACGGTGTCAACGGGTCAAACCTACGACAGAGCCTCCATTCAGAAATGGCTCAAAGCTGGAAACACCACGTGTCCCAAAACAGGGGAGAAGCTAACCAACACAGAATTGGTTCCCAATACAACTCTCAAGAGGCTTATCCAACAGTTCTGTGCCGACAACGGCATTTCAGTCAACAGCCCATCTAACCGTAACCGCAACATCGTCGCAGGTAGTCCCGCGGCGGCGCACGCTGTGCAATTCCTGGCGTGGTTCCTGACGCGGAGGCTGGCGTTCGGAACGCATGAACAGCAGCAGAAGGCCGCTTACGAGATTCGCGTGCTTGCCAGAACCAGCATTTTCAATAGGTCTTGTTTGATTGAAGTGGGAGCAGTGCCTCTTCTAATAGAACTTTTAGCATCTGCGTCTAACGATAAACCCACTCAAGAGAACGCAATCTCCGCTCTATTGAAGCTCTCTAAACATCCGAATGGACCAAAAAATATCATAACCAGTGGGGGCCTAAACGTAATTCTCTCCGTGCTGAAGAACGGAATTAGCCTCGAAATTCGTCAAGTAGCTGCTGCCATCATGTTTTATCTCTCCTCGGTGAAAGAGTACCGGAAAATAATAGGCGAGAACCCCGAGGTGATTCCGGCTTTAGTGGAGTTAGTTAAAGAAGGAACAACCTGCGGGAGAAAGAACGCCGTGGTTGCCATTTTCGGCTTGCTTTTGCTTCCTAGGAATCACCAAAGGGTGGTCGCGGCTGGAGCAGTTCCTGCGCTGCTTGACATTTTGGTTTCTTCAGATAAGGAGGAGCTTGTGGCTGAATCATTGGCGGTTCTTGCAGCGCTGGCTGAGAATGCTGACGGGGCGCGTGCAATATTTGAAGGTTCGGCATTGGCGTTAATTACGGGAATGCTGCGATCTATGACGTCACATGCGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTCAATATTGGGGCGGAGGTGGTGGCTGTTCTGGCGAAGGACCCTTCGGTGATGCCATCGCTTTATTCGCTTGTGACGGGTGGTAGTAGCCAGGGCGCAAAGAAAGCGCGGTTCCTGATCAAAGTTATACAGGACTTCCACGAGACTAGAACTTCTGGACTCAAGGGTTCCTCTCCTCCTCAGGAACGATCGCTTAACGTTTGGTGA 2049 0.5071 MTPRDRRILSFPAVHPCGDISPPTLLASLITLSQSVCNFQPQFFPTQRRNARETIRQIGILLVLLQEIRDRGLSIPHSTILCLAELHFALQKINFLMQDCTLQGARLLMLSKSQHVASQFRCLIRAVATSLDVLPLQEFDVCAEVRELAELVTRQARKAKFEVDPSDARACKTLHNVLRLFARGTEPDLSSMQGIIDYLQIRTWTDCNKEISFLEEEISLECRDRDEREVPLLSSLVGFLSYCRGVIFETTEDINQSEGRCSTEMTPLTLTLLTSVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTTCPKTGEKLTNTELVPNTTLKRLIQQFCADNGISVNSPSNRNRNIVAGSPAAAHAVQFLAWFLTRRLAFGTHEQQQKAAYEIRVLARTSIFNRSCLIEVGAVPLLIELLASASNDKPTQENAISALLKLSKHPNGPKNIITSGGLNVILSVLKNGISLEIRQVAAAIMFYLSSVKEYRKIIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVVAAGAVPALLDILVSSDKEELVAESLAVLAALAENADGARAIFEGSALALITGMLRSMTSHAGKEHSASILLSLCVNIGAEVVAVLAKDPSVMPSLYSLVTGGSSQGAKKARFLIKVIQDFHETRTSGLKGSSPPQERSLNVW* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1647 682 Gene3D - 352 665 IPR011989 -
Vra7g1647 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Vra7g1647 682 PANTHER OS07G0532750 PROTEIN 4 667 - -
Vra7g1647 682 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Vra7g1647 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Vra7g1647 682 SUPERFAMILY RING/U-box 277 351 - -
Vra7g1647 682 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Vra7g1647 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Vra7g1647 682 SMART arm_5 404 447 IPR000225 GO:0005515
Vra7g1647 682 SMART arm_5 448 489 IPR000225 GO:0005515
Vra7g1647 682 SMART arm_5 532 573 IPR000225 GO:0005515
Vra7g1647 682 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Vra7g1647 682 PANTHER U BOX DOMAIN-CONTAINING 4 667 - -
Vra7g1647 682 CDD RING-Ubox_PUB 281 323 IPR045210 -
Vra7g1647 682 SUPERFAMILY ARM repeat 381 655 IPR016024 -
Vra7g1647 682 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1647 Vra-Chr7 34984163 34986673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1647 2 682 U-box Gene Family AT1G60190 41.583 9.32e-172 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1647 - - gmx:100787869 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1647 7 34984163 34986673 Vra7g1647 7 34984163 34986673 ECH