Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1644 ATGAAGAACACAAACACTACTGTCACTGCTTCATCAAAACTTGACCGCAAAACCATTGAAAGGAACCGCAGAATCCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCAATTATCCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTCGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGCAAGCCATGAAAATAATGAGACCAACCCAAACCAATAATAACGGGATTTTCAATATTGACTCTGAGTTGCCTCTCCTTGAGATAAAGGAGTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGTTGAAGTTGTCGCTGCCAACTTCTCTACTGTTGATGATAAGATCTTTTACACAGTTCATGCTCAGGTTAAAATCTCAAGAGTTGGCGTTGAGCCAACGAGGGTATATCAAAAGCTTCAGGAATTGATTACACCACTAGAAAGCTGGTAG 564 0.4255 MKNTNTTVTASSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMKIMRPTQTNNNGIFNIDSELPLLEIKELGSGIEVMLISGVNKNFMLYEVISVLEEEGVEVVAANFSTVDDKIFYTVHAQVKISRVGVEPTRVYQKLQELITPLESW* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1644 187 Coils Coil 63 83 - -
Vra7g1644 187 PANTHER TRANSCRIPTION FACTOR BHLH162 9 182 - -
Vra7g1644 187 Gene3D - 2 92 IPR036638 GO:0046983
Vra7g1644 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 81 IPR036638 GO:0046983
Vra7g1644 187 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 182 IPR015660 GO:0003700|GO:0006357
Vra7g1644 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Vra7g1644 187 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1644 Vra-Chr7 34942032 34943547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1644 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.632 2.74e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1644 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1644 - - vun:114179389 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0495 5 5693530 5694683 Vra7g1644 7 34942032 34943547 ECH
Vra7g1644 7 34942032 34943547 Vra7g1644 7 34942032 34943547 ECH
Vra7g1644 7 34942032 34943547 Vra5g0495 5 5693530 5694683 PCT