Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1640 ATGAAGAACTTGTACTGGTTTAAAGAAATTTCTAACAACGTGAGATCAGGCAGAAGGCTATCACTTGGGGAGTATAAGCGAGCAGTGTCATGGTCAAAGTATTTGATCTCTTCTGGGGCAGCCATAAAGGGAGAGGCTGAACAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATTGGGTCCAAGTTTGCTTCTGGGAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGACGTTGCAATTAAGCTGGTGAGTCAACCGGAGGAGGATGAGGACTTGGCTGTTTCGCTTGAGCAGCAATTCACTTCTGAGGTTAATTTGCTCTTTCGTTTGCGCCATCCAAATATCATCACCTTTGTTGCAGCTTGCAAGAAACCTCCTGTGTTCTGCATTATTACTGAATATTTGGCCGGGGGTTCCTTGAGAAAATACTTGATTCAGGAAGGACCACATTCGGTTCCTCACAACGTTGTTCTGAAATTAGCGTTAGACATTGCTCGGGGAATGCAATATCTTCATTCTCAGGGTATACTACACAGGGATCTCAAATCAGAAAACCTGCTGTTGGGGGAAGATTTGTGCGCAAAAGTAGCAGATTTTGGGATCTCATGCTTGGAATCTCAGACTGGTAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCGTCACACCAAAAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACCCCATTTGACAACATGACACCAGAGCAGGCAGCATATGCAGCCACTCACAAGAATGAAAGGCCTCCGTTACCATGTGAGTGTCCACGGGCATTTAGTCATCTGATAAACAGATGCTGGTCGAGCAATCCAGATAAAAGACCACATTTTGATGAGATAGTTGCAATTTTGGAGAGCTATAGTGAAGCACTTGAGGAGGATCCGCAGTTTTTAACCACTTACAAACCACGTCCTAATAATCTTATTCTCAGATGCTTACCCAAATGTAATACTACTGCCAATGTATCTGCTTCTACCAAACCTTAA 1068 0.4373 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLISSGAAIKGEAEQEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVSLEQQFTSEVNLLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLIQEGPHSVPHNVVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLCAKVADFGISCLESQTGSAKGFTGTYRWMAPEMIKEKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAATHKNERPPLPCECPRAFSHLINRCWSSNPDKRPHFDEIVAILESYSEALEEDPQFLTTYKPRPNNLILRCLPKCNTTANVSASTKP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1640 355 CDD STKc_MAP3K-like 64 311 - -
Vra7g1640 355 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1640 355 SUPERFAMILY Protein kinase-like (PK-like) 44 311 IPR011009 -
Vra7g1640 355 Pfam Protein tyrosine and serine/threonine kinase 59 310 IPR001245 GO:0004672|GO:0006468
Vra7g1640 355 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Vra7g1640 355 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1640 355 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Vra7g1640 355 Gene3D Transferase(Phosphotransferase) domain 1 140 334 - -
Vra7g1640 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vra7g1640 355 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Vra7g1640 355 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vra7g1640 355 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vra7g1640 355 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vra7g1640 355 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vra7g1640 355 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1640 Vra-Chr7 34862444 34865669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1640 30 320 MAP Kinase Kinase Kinase AT1G62400 64.068 8.49e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra7g1640 PK_Tyr_Ser-Thr 9.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1640 - - gmx:100785212 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1640 7 34862444 34865669 Vra7g1640 7 34862444 34865669 ECH
Vra7g1640 7 34862444 34865669 Vra5g0500 5 5854103 5858741 PCT