Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1638 ATGGAAGCTTATGAGAACGAATCGAAGAAAGGGTTCTGGAATGCGGAGGAAGACTCAGTTCTAACTAATTACGTGAAAAAGCATGGAACTGGGAAGTGGAACAGGATTCCTAAAGTGACAGGGTTGAAGAGAAGCGGGAAAAGTTGCAGACTGAGATGGATGAATTATCTAACTCCCGATGTTAAGCGTGGAGAATTCTCAGAAGAAGAAGAAGACCTTGTTGTTCGGCTTCACAGTCTCCTTGGAAATAGGTGGTCTTTGATTGCGGGGAGGATTCCGGGGAGAACAGACAACCAGGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTGTTGATAAGAAGAAGAAAAAGAGAAAAGCATCATCAAAGGAGAGGAGTGGCGAAGGTGATGGTGAGAAGCTTTGGAGTGATGATCTGATGGAGTTGGGAAACATGCATGAGGAGATTATCAGAGATGATTTTGGATGTAGCTTTTCTTTTCCTAATATTAGTGTCTTCGATCTCTGCACTTCTCCTTACTGCACTCAATCTTTTCACCACTCTTTCTTTGCCCTTTGA 570 0.4281 MEAYENESKKGFWNAEEDSVLTNYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLTPDVKRGEFSEEEEDLVVRLHSLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVVDKKKKKRKASSKERSGEGDGEKLWSDDLMELGNMHEEIIRDDFGCSFSFPNISVFDLCTSPYCTQSFHHSFFAL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1638 189 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vra7g1638 189 CDD SANT 65 108 IPR001005 -
Vra7g1638 189 Gene3D - 64 136 - -
Vra7g1638 189 SMART sant 9 59 IPR001005 -
Vra7g1638 189 SMART sant 62 110 IPR001005 -
Vra7g1638 189 CDD SANT 13 57 IPR001005 -
Vra7g1638 189 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vra7g1638 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Vra7g1638 189 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vra7g1638 189 Gene3D - 10 62 - -
Vra7g1638 189 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 140 - -
Vra7g1638 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vra7g1638 189 MobiDBLite consensus disorder prediction 116 136 - -
Vra7g1638 189 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vra7g1638 189 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Vra7g1638 189 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 5 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1638 Vra-Chr7 34847436 34848301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1638 5 128 MYB Transcription Factor Family AT5G40330 66.935 1.66e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1638 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1638 K09422 - tcc:18603898 186.808