Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1625 ATGCAGTATTACCAACCACCCTCTTTCATGGATTCCCTCAAGGCACTTGAGGCTGATATCCACCATGCCAATGTGCTGGCAGCTTCCATTCCAAAGGGGAATGGCCAGGATTACCTTCAAATGAAGTTAGTATACAGTAAACTGGCACCGATTTTTCTGTTTTTCTTTCAATGGATGGATTATTCATGCTCCTGTCTACCTTCCAGTCATTTTAATCTTTTCCGTGTGCTTGTGTATAAGGTGCACACTAATGGAAAATCAGATATGTATTCAAGTGGAAGGAAAGCAACCGTAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAACGACTTCATGGTGATTTGGTAGAAGCTAAAATTGGTGAAGAAAATGATGACAACACTGAGATGATAAGCAGTAAGGAGGAGTTGGAGAGAGAGCATGAGTGTGGCATTTGCTTGGAATCTACCACCAAAATGGTTTTGCCTAATTGCTGCCATGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCAGGGGAAGCTTAAAGAGAGTTAATTCGGGAGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATAAACAGAGAAGATGTGTTGCGTCTTTATCTCTTTGTGAATAATCTTCCCCAATATACTCCTGATGCTGTTTTCCTTATGTACTACGACTACTTATTTTAG 723 0.3997 MQYYQPPSFMDSLKALEADIHHANVLAASIPKGNGQDYLQMKLVYSKLAPIFLFFFQWMDYSCSCLPSSHFNLFRVLVYKVHTNGKSDMYSSGRKATVREFYSVILPSLQRLHGDLVEAKIGEENDDNTEMISSKEELEREHECGICLESTTKMVLPNCCHAMCINCYNDWNTRSESCPFCRGSLKRVNSGDLWVLTCSRDVIDMQTINREDVLRLYLFVNNLPQYTPDAVFLMYYDYLF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1625 240 SMART ring_2 144 181 IPR001841 -
Vra7g1625 240 SUPERFAMILY RING/U-box 128 187 - -
Vra7g1625 240 Pfam Ring finger domain 143 182 IPR001841 -
Vra7g1625 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 191 IPR013083 -
Vra7g1625 240 PANTHER RING FINGER PROTEIN 41, 151 7 240 - -
Vra7g1625 240 Coils Coil 121 141 - -
Vra7g1625 240 ProSitePatterns Zinc finger RING-type signature. 159 168 IPR017907 -
Vra7g1625 240 ProSiteProfiles Zinc finger RING-type profile. 144 182 IPR001841 -
Vra7g1625 240 PANTHER OS01G0905700 PROTEIN 7 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1625 Vra-Chr7 34729087 34730341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1625 143 203 Rapid Response to Elicitors AT3G16720 32.308 7.40e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1625 - - jre:109018365 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1625 7 34729087 34730341 Vra7g1625 7 34729087 34730341 ECH