Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1623 ATGGAAGCCTCTGAATCTGATTCTGCGCCACTTTCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTTCTTCTCCCCCTCCTTCTCCTCCTCCTCAATCGTCAGATCTCAATCACGCCGCCGAGCATGTCATACTCTCTGCGGAGCTTCAGAGCAAGTTGGATTTGAAGGTTGAGGATGAAAGTGAGGGCAAAGTTTCCGACTTGAACGACGGTGGAGGAGTTTGCGACGAAGAAACTGCTAAGGGTGATGGAGATAGTAGGGGTTCGGAGTCAAATAGTTGGAATGAGGATGTGGGTGTTGGTGCTGATGAAGATGGTGTTGGAATTGGTGATGTTCATGGTGATGATGGAGAGGAGACCAAGGAAGACAGAAACAGTGATGTAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCTATTAGAAGGAAAACCCAGGCTATTAGAGAGAAGGCGGGAGAAAGAGAAGAACCCACAGACAGATCAAGCTCAACAGAATGCAAGTATTATCAAAGATCCGGGGGTTGTAAATTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAACACCGGCACCAGTACCAGTTTTTGAACTTAACTTTCTTGGCCTGCCTATTCGTCAGGGGGAGAGGGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGTTGGAGGATGTGATCCTCCTTCGGGGTTTGGTAATGGAGGACCTATTTCATTACAAGGTGTATCACGACCATCTGTACCCTCCTGGTCTTCTCCAAGATCATTAAACGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGACTGGAATGGATACCAGGCATCTGTCTACCTACCTGAGAGGAACATGCATCCACCTTCTTCATTTGTCTTGAACAACCCAGCAGTCGATACAAATGTTTACTTGCACCATCAGAAGCAGATGTCCGTGGAAGAGTTTCCAGAAAGGCCCGGTGAACCTGAATGTAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTTCGAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAAAGTGTCTGCTCTCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCTATAAACTTGCAGCCCTTGATGATGTCTGGACTTGGGGACCAGTCATACTCAAATTCAGCTAGTGTGGAGGTGCCTGGGATAGGTGAAACTACAGCTGAAACTGATGTAACAATTCAGCAATCTGTGTAA 1449 0.4541 MEASESDSAPLSISNGEDPQLGASSPPPSPPPQSSDLNHAAEHVILSAELQSKLDLKVEDESEGKVSDLNDGGGVCDEETAKGDGDSRGSESNSWNEDVGVGADEDGVGIGDVHGDDGEETKEDRNSDVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAIREKAGEREEPTDRSSSTECKYYQRSGGCKFGKSCKYNHTRGKISTTPAPVPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTVGGCDPPSGFGNGGPISLQGVSRPSVPSWSSPRSLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSSFVLNNPAVDTNVYLHHQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRISRLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGDQSYSNSASVEVPGIGETTAETDVTIQQSV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1623 482 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Vra7g1623 482 SUPERFAMILY CCCH zinc finger 186 213 IPR036855 GO:0046872
Vra7g1623 482 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Vra7g1623 482 SUPERFAMILY CCCH zinc finger 236 261 IPR036855 GO:0046872
Vra7g1623 482 MobiDBLite consensus disorder prediction 53 67 - -
Vra7g1623 482 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 482 - -
Vra7g1623 482 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Vra7g1623 482 Gene3D - 110 174 - -
Vra7g1623 482 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Vra7g1623 482 PANTHER PROTEIN PHOSPHATASE RELATED 6 482 - -
Vra7g1623 482 SUPERFAMILY CCCH zinc finger 412 440 IPR036855 GO:0046872
Vra7g1623 482 MobiDBLite consensus disorder prediction 1 132 - -
Vra7g1623 482 MobiDBLite consensus disorder prediction 109 132 - -
Vra7g1623 482 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Vra7g1623 482 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Vra7g1623 482 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Vra7g1623 482 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Vra7g1623 482 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Vra7g1623 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 395 IPR000571 GO:0046872
Vra7g1623 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 259 IPR000571 GO:0046872
Vra7g1623 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Vra7g1623 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 208 IPR000571 GO:0046872
Vra7g1623 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Vra7g1623 482 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Vra7g1623 482 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g1623 482 SUPERFAMILY CCCH zinc finger 373 398 IPR036855 GO:0046872
Vra7g1623 482 ProSiteProfiles Zinc finger C3H1-type profile. 368 396 IPR000571 GO:0046872
Vra7g1623 482 Gene3D - 412 460 - -
Vra7g1623 482 Gene3D - 349 410 - -
Vra7g1623 482 Gene3D - 177 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1623 Vra-Chr7 34713090 34717431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1623 130 443 C2H2 Transcription Factor Family AT3G02830 40.597 1.12e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g1623 zf-CCCH 7.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1623 - - gmx:100786894 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0807 1 9510180 9512238 Vra7g1623 7 34713090 34717431 ECH
Vra7g1623 7 34713090 34717431 Vra7g1623 7 34713090 34717431 ECH
Vra7g1623 7 34713090 34717431 Vra5g0689 5 11076954 11081352 PCT