Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1622 ATGACGGCTTCGGAGGAAGTACTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGTCCAACCGAGGCCGAGTTCCAAAACCCGATCGCCTATATCTTTAAAATCGAGAAAGAAGCCTCGCAGTACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCTCCCAAGAAAACAGCAACTGCCAACCTCACGCGCTCCCATCCTACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGGCGCCCGCAGCCCGTGCGCCGCCGCGTCTGGTACAGCGGCCATCACTACTCTCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAGCAAACCCAAACCCTCTCCTCTTGAACTCGAAACGCTATACTGGAAAGCCACTTTAGACAAATCCTTTTCTGTCGAATACGCGAACGACATCCCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTTGCGCGATGCCGATTACGTTGGTGACACCCCGTGGAATATGAGGGTGGTTTCGCGAGGGAGTGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTAACGTCACCCATGGTCTACGTGGCGATGTTGTTCAGCTGGTTCGCTTGGCATGTGGAGGATCATGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAAGGACGCTGCTGTGGCATTCGAGGAGGTTGTCAGAGTTCATGGCTATGGCGGCGAGATCAATCCTCTCGTAACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCGCCGGAGGTTTTTGTTGGTGCCGGTGTTCCCTGTTGCAGGCTGGTTCAAAATGCTGGGGAATTTGTAGTGACCTTTCCAAGAGCGTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAAGCGGCTAACATTGCCACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGAAGAGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTGTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGGAGTTCTCGGCTTAAATATAAGAGAAATGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGATCTGCTATAGTACTTCTCCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGAGTTGGATCACGACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTATGAGGGAATGGATTCCTCAGATTTTATTTCTAATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAAAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTTTGCCATTAAGTTCAAATGGGAACATATACACTTCAAGTTCAAAAACAGACAGTAAAAAGGAAACAGATAAAGGAGATGGATTGTCAGATCATAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTGCAGCCCAGAGAACCAGCAGCTACGTACCTTATGTCGGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAATTGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGATGGACTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCATTCAATCTGTTGAGCACCATGCACAGATTGCTGATCAAAATTTTGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGGGGGATTAGATATTGCACTTGATGGTGATGAATTGAATGCAGTAAACCATTCGGCCTCTAATGGATCTCAGGAGATGTCTAGTATGCCTTCTCATTTTCAAGATCCCCATACTAGTCCCATGGTTAGAGTCATTAGACTTAATAAAGGAGATGATATTCATTCAAGAAGAATAGACAATTATGAGTATTATATGCATAAGAGACTTGAGCAAATCATGACTCCTTTAAACTACTCTGTTAAGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTTTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGTCCAATTGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGGTTATACGTGGAAGAATACTGTATACAGGCAAGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAACTCTCCAGCAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGAAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTCAAAGATCAGAAAGCAACCACAAAAGCAATACCTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTTGAGAGAGATTCGCTTTCAGATAACTCCATTGAAGATAAATTCAATAAATATCAAAGGAGGATTATTGGGGGTAAGCGCTCCAGGCATATTGAGAGAGATGATACTGCTTCGGAAGGGGATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACCAAGCATTCAGAATCTAGTGAAAATGATGGAATGTCTGATGATTTGCTGGATGATGATTCTTGTATACAGCATCGGAGGAGGGCTAACACCAATGAAGCTAAATTAATTGACAGTGATGTTTTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCGGAGGGGGGAGCTTAGCAATGAGCAAGATGCTATTTCAGACGATTCATTGAGTGCTGGTTCTCTTGAACTGCACGGAAAGATTCCCAAAGGCAACTATGATAAATACATTACTGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTGTTTATGGAAGCAGAGAGGGAAGATATCTAAAGGCAGACAAAGATCACTTTCTGCTAAAAGTGGTGATGGTCTGAAGCACCATAGGCAGAAGCAACAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACTTTGCAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGTTCTTTCAAGTGTCAAAGAAGGATTCCTAAAAATAAGCAAGTGAAGTTCATCGAGGTGGAAGATGTAATGTCTGATGACCAGTTGAAGGGTGACTTTCAAAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATGAATGACTTGGCAGAAAATAATTTTCATATACTGCATAGAACTCGTAAAAGGAAGCAAGTTAAAGGTATGGACGAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCGGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAAGCAGAGATTCTTCAACAAACGAAACAAACTAATCCACACCATGCGAGAAACAAGACATCCCATCCTGCCAAACAGAAACAAGGTGCTCATACTAAAATGAAATCAAGGGCTGCTCGGCAGACAAAGAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGACCTCGAACACGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCAGAAGGAAAATTGAAAGAAAAGAGAACCAAAAGGGAAAAGGAGAAGAATACAACAGCTGCAAAGGTTTTAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATAGAGGGGTGCACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAAGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGTGCTGAGCCAGGGTGTGGACAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAGAAGAATTGTTGA 4602 0.4346 MTASEEVLPWLKSLPVAPEYRPTEAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTATANLTRSHPTFTTRQQQIGFCPRRPQPVRRRVWYSGHHYSLREFEAKAKAFHKTYLKKSKPKPSPLELETLYWKATLDKSFSVEYANDIPGSAFSPLRALRDADYVGDTPWNMRVVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAIVLLPRSSSDFSVCSKLRVGSRQLKVNPDFSLNVYNYEGMDSSDFISNDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPLSSNGNIYTSSSKTDSKKETDKGDGLSDHRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSIAHEDASIPKPRTYTGWTKQNAQHDSNGVPIQSVEHHAQIADQNFEEALNSGREKGNTALALLASAYGNSSDSEEDQGGLDIALDGDELNAVNHSASNGSQEMSSMPSHFQDPHTSPMVRVIRLNKGDDIHSRRIDNYEYYMHKRLEQIMTPLNYSVKSEDHDNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYTWKNTVYRQANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQNSPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIQRSESNHKSNTSTRKSGKKWKKSVEKGGIWEESFVERDSLSDNSIEDKFNKYQRRIIGGKRSRHIERDDTASEGDYSPLPLHRKPITKHSESSENDGMSDDLLDDDSCIQHRRRANTNEAKLIDSDVFSDDTMDYGSDWLRRGELSNEQDAISDDSLSAGSLELHGKIPKGNYDKYITEEDVISDDQREVCLWKQRGKISKGRQRSLSAKSGDGLKHHRQKQQQRNLRSRQDKHFAVENITSDDQMEGRSFKCQRRIPKNKQVKFIEVEDVMSDDQLKGDFQKPQRSTRRSRQNKYNDKDVMNDLAENNFHILHRTRKRKQVKGMDEDNIDSDDQMDDILHQRHKRTLQSKQSKAEILQQTKQTNPHHARNKTSHPAKQKQGAHTKMKSRAARQTKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGKLKEKRTKREKEKNTTAAKVLVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1228 1255 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1154 1185 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1297 1398 - -
Vra7g1622 1533 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1524 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1272 1287 - -
Vra7g1622 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1441 1470 IPR013087 -
Vra7g1622 1533 Coils Coil 1293 1313 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1015 1056 - -
Vra7g1622 1533 Gene3D Classic Zinc Finger 1386 1440 - -
Vra7g1622 1533 ProSiteProfiles JmjC domain profile. 166 335 IPR003347 -
Vra7g1622 1533 Pfam jmjN domain 18 51 IPR003349 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1320 1343 - -
Vra7g1622 1533 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1524 - -
Vra7g1622 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1473 1495 IPR013087 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1162 1185 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1268 1287 - -
Vra7g1622 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1481 1525 IPR036236 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 665 683 - -
Vra7g1622 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1532 IPR013087 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1034 1048 - -
Vra7g1622 1533 SUPERFAMILY Clavaminate synthase-like 96 338 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 885 904 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 885 899 - -
Vra7g1622 1533 Gene3D Classic Zinc Finger 1441 1525 - -
Vra7g1622 1533 SMART cupin_9 166 335 IPR003347 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1357 1398 - -
Vra7g1622 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1443 1465 IPR013087 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 930 963 - -
Vra7g1622 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1527 IPR013087 -
Vra7g1622 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1441 1477 IPR036236 -
Vra7g1622 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1471 1500 IPR013087 -
Vra7g1622 1533 Gene3D Cupin 10 339 - -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 1304 1319 - -
Vra7g1622 1533 SMART c2h2final6 1471 1495 IPR013087 -
Vra7g1622 1533 SMART c2h2final6 1441 1465 IPR013087 -
Vra7g1622 1533 SMART c2h2final6 1501 1527 IPR013087 -
Vra7g1622 1533 SMART c2h2final6 1418 1440 IPR013087 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 665 685 - -
Vra7g1622 1533 Pfam JmjC domain, hydroxylase 199 317 IPR003347 -
Vra7g1622 1533 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Vra7g1622 1533 SMART JmjN_1 16 57 IPR003349 -
Vra7g1622 1533 MobiDBLite consensus disorder prediction 930 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1622 Vra-Chr7 34696993 34705037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1622 1311 1531 C2H2 Transcription Factor Family AT3G48430 54.043 2.48e-66 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g1622 JmjC 7.6e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1622 - - gmx:100775813 1877.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1622 7 34696993 34705037 Vra11g0280 11 1974829 1994460 PCT
Vra5g0692 5 11106602 11116402 Vra7g1622 7 34696993 34705037 PCT