Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1620 ATGGATGGTAGGAGACATTCTGTTGATATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCGTCAACCAATGGTGTCAGCAAACTCTCTCCTTTGATTCATGATGGAGATTGGGACAATGGTTCTAGTAATGGGATTTCTCTGAGTTTGAGATTTCTGAACGGTTCTCATGCTGGTGATTGCGACGGTAATGGTTTTTCAAGATCAAACAGTTTAGACTTCAAGGATCTGAGAGAGCAGGAAAATGCTGAGTTGGAATTGAAAATGTTGAACTACAAGATGAACTATTGTGGGATCTCTCGTCACGAAGGGCAACGAGATGATGAAACTGTGTACTCTAATCCTAAGCAGCAAGGTATTTCTGGAGATAAATCGCCAAATGGAAGCAGTTGTAGTGACCATGAAGGTGAAAGATTGGATTTGGTTGCCATTACGCCTCCATGTAATCATTTGAAGGATGGGGAGTTATGCTATTTATCAACTGCATTGAGAGTAGATCACTCAAAGTCAGCTAAAAAATCACTACGCAAGAATCAAACGAAACCATCTGGAGTGGTGGGTGATATAGCAAGCCATGTAGGAAGCAAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCGTTGTGGCTTGGAACATGTCACCCAAGATGTTGACGCTTTATATAATCGCCATGGATGTGGATTAAGGAGCTGTTGGTCAAAGTCACCAAGGTTCAGAGAATCAAATCATTATTCCGAAATAGAAGGCCTTCCCTTGATATTGCAGCACGCTAATGAAACGGATCTCAGTGGACGTAGAAACATTGGACACATTGGTGGTGAAATTAGTCCAAATATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTGTAGGGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACTGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTGTCCTCTGTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAGAATGTTAGTGAAGTGGATTCTTTGAGAATCAATCGTGCAGAGAAAGTTAAATCCCTTGTTAAGCATGCATGCATTCCTCCAGTTTCCTCAAGCTTTAAAGTGTTCATTGTTGATGAGTGCCAGTTATTGCATGGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAATGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACGTTCCTCGGAGTGCAGCATCACGGGCTCAGAGGTATCACTTTGCAAAGATTAAGGATGTTGACATTGTAAGAAGATTAGAAACAATATGTGCCGAAGAAGGTCTTGAATCTGAACAAGTTGCGTTGAACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCAGAAATTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAGTATCCTTAGTCCACGAGCTAACTGGGATCATTTCTGATGATGAATTGCTTGATTTGTTGGACCTAGCTTTATCCTCTGACACTTCAAATACAGTTATACGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCGTGGCTCTGAAATAAAAACAGGATTTAATAATAGATATACATCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTGCAGCTGAGCTCCGTTGAAAATTCATCGGCTGATGCAAATACTACGAAGTTGTGTATACGACCTGCATCCATTAGAGATGGTGATATCTGCACTACATCTCCTAAAGGTGACAGCTTGGAGCATCTTGCCACAACAGATCAATGTGATGATAAGTCATACAGGTTAGCAGTACAGGAGGATCACAAAGGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTCAGAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAATTGCGGAGTTGGAGTTCCAGCACCGTTACTATGTAAGTAGGGCCGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAGTTCATATTGGGCTGTAACCTTGAGCTCAGAATCAATTATGTTCCTTCATGTGCCTCAGATTCTATTTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTCGGTTGTTCCCGTAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGAATACACATCTCAAAAGCCCACGATGAATGTTCAAACGCTAACTTGTTCCTCTGATTATGAACCCCGGGTGCCACCAGTTGAGTCCGGCCATGGAATTGGAATGCAGGTTATGACAACTTTGAGAAGTAGCGAAGGAAATTTGCTAAGCTCAGGGAAAATGGTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCTTGCACGGAAGAGGGATGCAATCATGAACACTTAGCTTCATCAACCCCTGATTTAGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACAGCAAAGATTTTGTTTTATCTATGCCCAAGTTCAACTGTTCTGA 2850 0.4144 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSKLSPLIHDGDWDNGSSNGISLSLRFLNGSHAGDCDGNGFSRSNSLDFKDLREQENAELELKMLNYKMNYCGISRHEGQRDDETVYSNPKQQGISGDKSPNGSSCSDHEGERLDLVAITPPCNHLKDGELCYLSTALRVDHSKSAKKSLRKNQTKPSGVVGDIASHVGSKQCLSVYDSISARCGLEHVTQDVDALYNRHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHANETDLSGRRNIGHIGGEISPNMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAICRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVEQKPCGLCRECVLFFSGRNKNVSEVDSLRINRAEKVKSLVKHACIPPVSSSFKVFIVDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDNVPRSAASRAQRYHFAKIKDVDIVRRLETICAEEGLESEQVALNFIAARSCGSLRDAEIMLDQLSLLGKKITVSLVHELTGIISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELRGSEIKTGFNNRYTSEADLQKLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVENSSADANTTKLCIRPASIRDGDICTTSPKGDSLEHLATTDQCDDKSYRLAVQEDHKGTLDSIWYKATEMCQSSRLRTFLRKQGKLSSVCISQGRAIAELEFQHRYYVSRAEKSWKLIASSLQFILGCNLELRINYVPSCASDSIYAKLKRSSFNFFGCSRRIRWKSLSSNEQGSESDYAEYTSQKPTMNVQTLTCSSDYEPRVPPVESGHGIGMQVMTTLRSSEGNLLSSGKMVLNRPDQETPRISCSRVDSCTEEGCNHEHLASSTPDLDNQSDCFPGTRWLHKKFGSSYAPQQRFCFIYAQVQLF* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1620 949 SUPERFAMILY post-AAA+ oligomerization domain-like 529 640 IPR008921 GO:0003677|GO:0006260
Vra7g1620 949 SMART AAA_5 324 472 IPR003593 -
Vra7g1620 949 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 106 916 - -
Vra7g1620 949 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Vra7g1620 949 Gene3D - 284 463 IPR027417 -
Vra7g1620 949 MobiDBLite consensus disorder prediction 118 136 - -
Vra7g1620 949 Pfam DNA polymerase III, delta subunit 309 465 - -
Vra7g1620 949 MobiDBLite consensus disorder prediction 112 141 - -
Vra7g1620 949 CDD AAA 306 443 - -
Vra7g1620 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 514 IPR027417 -
Vra7g1620 949 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vra7g1620 949 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 106 916 - -
Vra7g1620 949 Gene3D - 467 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1620 Vra-Chr7 34668040 34673672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1620 283 590 Core DNA Replication Machinery Family AT1G21690 23.418 3.45e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1620 - - pvu:PHAVU_003G207500g 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1620 7 34668040 34673672 Vra5g0699 5 11232145 11237244 PCT