Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1619 ATGGCAACCACTTCCCCCTCTCTCCTCTTCCTCCTCTTTTCTCTCCTCACCCTCTCCGTCTCCCTCATTTCTTCTTCACCTGTTCAAAACCCTGAATTCGTTGCCCAGGAAGTTAACAGGAAAATCAATGCCTCTGTGGCCAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATAGACGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTGGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGGAAAATCTACGTGGTGACGGATTCAAGCGACGATGACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTTTGGATCATATTCGCGAGGGACATGGTGATTAAGCTGAAGGAGGAGCTTATAATGAACTCGTTCAAGACGATCGACGGAAGAGGAGCCAGCGTGCACATTGCGGGTGGGCCATGCATTACGATTCAGTATGTGACGAATGTTATAATCCATGGCATAAACATTCATGACTGTAAGCAAGGGGGGAATGCTATGGTGCGGGACTCCCCACGGCATTACGGGTGGAGGACCGTATCCGATGGTGATGGCGTGTCCATATTTGGAGGAAGCCACATATGGGTTGACCACTGCTCTTTGTCTAACTGCAATGATGGGTTGATCGATGCCATTCATGGGTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCATGATAAAGTGATGCTTTTGGGCCACAGCGACGCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGGGAAGGGCTGGTTCAGAGGATGCCAAGGTGTAGACATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCCGACCCAACTATCAACAGTCAAGGAAATAGGTTCGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGCGAATGGAAAGGGTGGAATTGGAGGTCTGAGGGAGACCTAATGGTAAACGGTGCGTTTTTCACAGCATCGGGAGCAGGAGCCTCCTCTAGCTATGCAAGAGCGTCTAGCCTGAGCGCGAGGCCATCTTCGCTGGTGGGCTCCATTACGACCAATGCGGGTGCACTCATCTGCAGGAAGGGTTCCCGCTGCTGA 1227 0.5118 MATTSPSLLFLLFSLLTLSVSLISSSPVQNPEFVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALICRKGSRC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1619 408 Pfam Pectate lyase 141 325 IPR002022 -
Vra7g1619 408 PANTHER PECTATE LYASE 18-RELATED 5 405 IPR045032 GO:0030570
Vra7g1619 408 SUPERFAMILY Pectin lyase-like 36 403 IPR011050 -
Vra7g1619 408 PANTHER PECTATE LYASE 5 405 - -
Vra7g1619 408 SMART amb_all 134 331 IPR002022 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Vra7g1619 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Vra7g1619 408 Gene3D - 59 401 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1619 Vra-Chr7 34649429 34651382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1619 1 408 Polysaccharide Lyase AT5G63180 78.537 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1619 K01728 - gmx:100101868 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0701 5 11346672 11349217 Vra7g1619 7 34649429 34651382 ECH
Vra2g1444 2 22514212 22516341 Vra7g1619 7 34649429 34651382 ECH
Vra7g1619 7 34649429 34651382 Vra7g1619 7 34649429 34651382 ECH
Vra7g1619 7 34649429 34651382 Vra5g0701 5 11346672 11349217 PCT