Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1612 ATGTCTATGCCTTTCTCTCTCACAACCACGTCTTCCTTCAACTCTCTCACAATGGCGGAATCATGCATTCTCTCTCTCCCTTCTCTCTTCCGCGTCAATAACAAAACCCTTTCTCTCTCACTTCCCTCCAAGCGCCTCAACCTCAAGCTTCCATGCTCCAATTCTTCCTTCTTTCCCCTCACCACCAACACCACCCGCCTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGGAGAGGAAGACAACGCCATATGGGAGAACGAAGGCGACTCCGCGTGGGGAACTGAAGAAGGTGCCGATGACGGCGCGGAGGAAGTCACCGGAGGGGGTTTCGCTCAACCACCCGAGGAGGTTAAGATCTTTGTTGGGAACTTGCCCTATGATGTTGATAGCCAGCAATTGGCTTTTCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTAATTTATAATAGGGTCACTGACCGTAGTCGTGGCTTTGGATTTGTCACCATGAGTACACTTGAAGAGGTTGAGAATGCTGTCAAGAAGTTCAGTGGTTACGAACTTAATGGAAGAGTGTTGACCGTAAATAAGGCTGCTCCAAAAGGAGCACAGCCTGACCGCTCATCACAGCCACCACGAACCTCGAGTTCTGCTACAAGAATCTACGTTGGGAACTTGCCATGGACTGTTGACAATGCTCGGCTAGAGCAAATTTTTAGTGAACATGGTAAGGTTGTGGAGGCTCGGGTGGTCTATGACAGGGAGAGTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGGCCAGTGAGGCTGATGTGAACGATGCGATTGCTGCTCTTGATGGTCAGGAATTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAACTCCTATTGA 918 0.5054 MSMPFSLTTTSSFNSLTMAESCILSLPSLFRVNNKTLSLSLPSKRLNLKLPCSNSSFFPLTTNTTRLPSLLTFVAQTSDWAQGEEDNAIWENEGDSAWGTEEGADDGAEEVTGGGFAQPPEEVKIFVGNLPYDVDSQQLAFLFKEAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVENAVKKFSGYELNGRVLTVNKAAPKGAQPDRSSQPPRTSSSATRIYVGNLPWTVDNARLEQIFSEHGKVVEARVVYDRESGRSRGFGFVTMASEADVNDAIAALDGQELDGRPIRVNVAEERPRRNSY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1612 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Vra7g1612 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Vra7g1612 305 SUPERFAMILY RNA-binding domain, RBD 210 303 IPR035979 GO:0003676
Vra7g1612 305 CDD RRM_HP0827_like 221 297 - -
Vra7g1612 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Vra7g1612 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Vra7g1612 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Vra7g1612 305 CDD RRM_HP0827_like 124 201 - -
Vra7g1612 305 PANTHER OS02G0815200 PROTEIN 112 304 - -
Vra7g1612 305 PANTHER OS02G0815200 PROTEIN 8 93 - -
Vra7g1612 305 MobiDBLite consensus disorder prediction 198 219 - -
Vra7g1612 305 PANTHER RIBONUCLEOPROTEIN 8 93 - -
Vra7g1612 305 PANTHER RIBONUCLEOPROTEIN 112 304 - -
Vra7g1612 305 Gene3D - 76 206 IPR012677 -
Vra7g1612 305 Gene3D - 207 304 IPR012677 -
Vra7g1612 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Vra7g1612 305 SUPERFAMILY RNA-binding domain, RBD 119 213 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1612 Vra-Chr7 34573409 34576134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1612 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 33.696 2.49e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1612 - - gmx:100811487 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0713 5 11588808 11591167 Vra7g1612 7 34573409 34576134 ECH
Vra7g1612 7 34573409 34576134 Vra7g1612 7 34573409 34576134 ECH
Vra7g1612 7 34573409 34576134 Vra5g0713 5 11588808 11591167 PCT