Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1601 ATGCAGTCAGATCTGCGACAGCGTCATCTTTGTTCCACCATGGAATCAAAATGCAAAGCCCTAAATCATTACCAAAGTCTACGAACAGATCAACCACAAATCACAAATCAACACCTGCAAAAACCAAAAAATCGTGCCACCATGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGTGCAATGAATCCAAACTAAATGAAGCATTTGACTCTATGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCGAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGATAACTGGAAATATGCTGGAACTGCACATTATGGGCGAAACTTCTCAGTTAAATGGTTGAAGGACATTGTAGCAAAGTTATTTTCATTTTCACATCATACGTCAAGGGCTTTGTGCAGCTTAACTGGAATTGAGATTGTTTCTTATGTTACTCCAGGCCAGCCAGCTTCTACTAGCATAAGTGTGCATCAGTGTTTCTTACGAGGTTAA 561 0.3939 MQSDLRQRHLCSTMESKCKALNHYQSLRTDQPQITNQHLQKPKNRATMYFIVKSCNRENLELSVQQGVWATQRCNESKLNEAFDSMENVILIFSVNRTRHFQGCAKMTSRIGGSVAGDNWKYAGTAHYGRNFSVKWLKDIVAKLFSFSHHTSRALCSLTGIEIVSYVTPGQPASTSISVHQCFLRG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1601 186 Gene3D ph1033 like domains 24 156 - -
Vra7g1601 186 ProSiteProfiles YTH domain profile. 47 185 IPR007275 GO:0003723
Vra7g1601 186 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 46 140 - -
Vra7g1601 186 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 46 140 IPR045168 -
Vra7g1601 186 Pfam YT521-B-like domain 49 109 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1601 Vra-Chr7 34442963 34447454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1601 123 179 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.614 6.08e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1601 K14404 - vra:106767982 374.785