Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1592 ATGAACAGAACTACCTTAATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTTGTAAGGCGAAGGAAGCCCACAAAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGAGAAGCAGTGCAGTGTCGGTATGCGGAATTCCCAAGTATTCTTACAAAGATGTACAAAGGGCTACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCTCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTTGGAAAAAGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCAAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATTCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCCACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATACGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGAGCAATTAAATGGAAAATATGATGTGCATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAATGAAGTCTCCCAAAGTCGACCAACGATGTGTGAAATTGTTCAAGCACTATCTCAGCTTTGTAAGAGGAATGGTAAAACTCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTCTATTGAATTGGACCAGATTGAAGCTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA 1185 0.4169 MNRTTLIFIIGICIGFVVGIGLTLSIVHCLVRRRKPTKVDKSISHRAVTIPVNVKGRSSAVSVCGIPKYSYKDVQRATSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKSREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDEQLNGKYDVHNLNDMASLAFICVNEVSQSRPTMCEIVQALSQLCKRNGKTLGRTSSAAALKDVSIELDQIEAKDFTSTASTDILGRLHSR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1592 394 CDD STKc_IRAK 85 347 - -
Vra7g1592 394 ProSiteProfiles Protein kinase domain profile. 79 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1592 394 PANTHER OS01G0253100 PROTEIN 57 379 IPR045271 GO:0004714|GO:0006468
Vra7g1592 394 PANTHER OS01G0253100 PROTEIN 7 57 IPR045271 GO:0004714|GO:0006468
Vra7g1592 394 SUPERFAMILY Protein kinase-like (PK-like) 59 344 IPR011009 -
Vra7g1592 394 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 57 379 - -
Vra7g1592 394 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 7 57 - -
Vra7g1592 394 SMART serkin_6 79 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1592 394 Pfam Protein tyrosine and serine/threonine kinase 81 344 IPR001245 GO:0004672|GO:0006468
Vra7g1592 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vra7g1592 394 Gene3D Transferase(Phosphotransferase) domain 1 155 367 - -
Vra7g1592 394 Gene3D Phosphorylase Kinase; domain 1 53 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1592 Vra-Chr7 34242590 34248747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1592 69 344 Glycoside Hydrolase AT3G07070 43.103 8.10e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vra7g1592 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1592 - - gmx:100816549 599.356