Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1569 ATGGAGATCTCATCTATCAGAGAATTACCTGATATGAAGGAGCAGGAAATAATGGAGGACTCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATGGCTTCTACTTTTGAAGAGACTTTTCAACAACATGCATTTACTTATCCAGACTTCAATCCCAAAGCATCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAAAAACATCAGCTGGAATCCCATAAAAAGTTCTGCTCAGACATCAGATGCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCATTGGGATTAGTGAAGGCCAATGAGGTGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAAGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGAATGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGCTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGACGAAACAATGCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAAAAGACCAAAGGCGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAATTATTGCTCAGATGGATATTGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCAGCTTTTACATCTTTCATGTGA 1035 0.4048 MEISSIRELPDMKEQEIMEDSNLLRQWHLSSIDDPNLLPMASTFEETFQQHAFTYPDFNPKASMETTLMDIERPTKHHKNISWNPIKSSAQTSDAQYVSFPNLLSFMDSNHISPLGLVKANEVACPITNSTTSLDTFSQGILGNHNYLFKACQETKKNGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISHLKQLQEKVKALEEAQNMKKTVESVVIVKKSQLSYDVNNSSEYDGPLFDETMPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDIEFCMGVKDVVRNLRSAFTSFM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1569 344 Coils Coil 204 234 - -
Vra7g1569 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Vra7g1569 344 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 343 - -
Vra7g1569 344 CDD bHLH_AtNAI1_like 165 240 - -
Vra7g1569 344 PANTHER BHLH TRANSCRIPTION FACTOR 2 343 - -
Vra7g1569 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 229 IPR036638 GO:0046983
Vra7g1569 344 Gene3D - 160 239 IPR036638 GO:0046983
Vra7g1569 344 SMART finulus 171 220 IPR011598 GO:0046983
Vra7g1569 344 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1569 Vra-Chr7 33960930 33963412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1569 165 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 54.645 1.34e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1569 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1569 - - vun:114179595 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1569 7 33960930 33963412 Vra7g1569 7 33960930 33963412 ECH
Vra7g1569 7 33960930 33963412 Vra10g1438 10 19432545 19435549 PCT