Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1562 ATGGACAACTATCAGTACCCCTCCTACCCTGACTCCGGCGACTCCTCGCCGCGCTCCAGGGAGATCGACTTCGAGAATCCGCCGCCCTGGGACGACCAGCAGACCCAGAGCTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGAACCCATGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCGCCATCAAGTTCCCCGCTTTCCTTTCCAAGCTCGCGGCTCTCTGCGACGCCACGCCGCAGGACCTCACCTTTAAGTACCAACTCCCTGGCGAAGACCTCGACGCCCTAATCTCCGTCACCAACGACGACGACCTGGAACACATGATGCACGAGTACGACCGTCTCTATCGCCCTAACTCCAAACCTGTTAGGATGAGACTCTTTCTCTTCACGCTTTCCTCGAATCCTAATTCCTCCTTCTCCTCGGATCGTGATCGCTTCGTTGATGCTCTTAACTCTGCTCCAATTCCTCCGCAACCTGACCCCATCAAAACCCCTCCCGTTACTCCTTCCAATGTCGATTACCTCTTCGGTCTCGACAAGGCCGTTGCTCCTCCCACTCTCCCTCCTTCCTTCTCTGCCGTCAAGTTCCACGATCCTGCGCCGGAGCCAGTCGCGCCGCAGCCGGAGTATCAGGTTCGCGGTGGAATCTCCGTTTCTGATCGCGTCGTTGGATCGGATCCGAGTGCGAACTCGATCGAGATTCAGAGACAATTGCAGCAGGAGATGCAGCGTTTGCAGATTGCTGAGAATGAATATCGGAGGAGGAGTGAGGATGGTTTCGCCGGTGGCTATGCCACTGCGGGAGGTGATTATTACATGCAGAAGATGCCGGAGAAGGTTCCGCCTGCTAATGCGCCCCATCCCGGTGGGTACTGGCAGGATAAGCAGTTTTCCGGCGAGGGTTTTCAGACGACAGTCACGACGGCTCCCGGGGGTGCTGATCAGCAGGTCTATGTTATCCCAGCACCAGGGACGTTCTACCACGCGCCGGTGGTGAGGCCCCCGGCGGCGCAGGGCTACTACGCAGTGCAGAGAATGGGGTCTGAGGGTTTCCGTGAGCAGGCTGTGTTCGGCGGCGTTGCTCAGACGAAGACTGCGTTTTCGTCGGCGGGGCCGGCGCAGCCGGTTAAGGCTTCGGGGTATGCTGAGGGATACGGCGTTGTGAGGCCTGCTGGGGTGCCGGATAATGCGGCGTACGCGCAGGTGGCGTATGATAGTGCGAGTGGGAGGCAGGTTTACTATACTGCGCAGGGAGGGGTGGTGCACGCGCCGACGCAGTACCAAGGCGTTCCGCCGGTGGTGGGGTCGGATGTTAGGCCTGTTGGGGTTTCGGTGGGCCAGGATGGTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1425 0.5923 MDNYQYPSYPDSGDSSPRSREIDFENPPPWDDQQTQSYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRAIKFPAFLSKLAALCDATPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNSKPVRMRLFLFTLSSNPNSSFSSDRDRFVDALNSAPIPPQPDPIKTPPVTPSNVDYLFGLDKAVAPPTLPPSFSAVKFHDPAPEPVAPQPEYQVRGGISVSDRVVGSDPSANSIEIQRQLQQEMQRLQIAENEYRRRSEDGFAGGYATAGGDYYMQKMPEKVPPANAPHPGGYWQDKQFSGEGFQTTVTTAPGGADQQVYVIPAPGTFYHAPVVRPPAAQGYYAVQRMGSEGFREQAVFGGVAQTKTAFSSAGPAQPVKASGYAEGYGVVRPAGVPDNAAYAQVAYDSASGRQVYYTAQGGVVHAPTQYQGVPPVVGSDVRPVGVSVGQDGKVVNKVNQGSV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1562 474 CDD PB1_UP2 43 143 - -
Vra7g1562 474 Gene3D - 60 144 - -
Vra7g1562 474 SUPERFAMILY CAD & PB1 domains 55 153 - -
Vra7g1562 474 Coils Coil 245 272 - -
Vra7g1562 474 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g1562 474 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 470 - -
Vra7g1562 474 SMART PB1_new 54 145 IPR000270 GO:0005515
Vra7g1562 474 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Vra7g1562 474 PANTHER OS05G0427100 PROTEIN-RELATED 1 470 - -
Vra7g1562 474 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1562 Vra-Chr7 33787060 33788863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1562 38 166 MAP Kinase Kinase Kinase AT5G57610 43.382 3.81e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1562 - - gmx:100810467 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1562 7 33787060 33788863 Vra10g1446 10 19490623 19492423 PCT