Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1558 ATGGGGAGAGGAAAGATTCCCATTCAAAGAATCGAAAATTCGACGAACCGGCAAGTAACGTTCTGTAAGAGAAGAAATGGATTGATGAAGAAAACTAGAGAACTATCTATTCTCTGTGATGCTGAAGTTGGAGTCATTGTGTTTTCCTCCACGGGCAAACTTTATGAGTATTCAAACACCAGCATGAAATCAATCATTGATCGCTTTAACAAGCTCAACGAGGACCATGGTTGGCTAATGGATCCTGCTTCATCTGTCAAGTTTTGGCAGAGAGAAGCAGCATGCTTAAGGCAACAACTAGAACGTTTGCAAGAAAGCAACAGCCAACTGATGGGTGAAGAACTTTCTGATTTGAATATCAATCAGCTAAAGGATCTGGAAAATAAACTCCAAATTGGTTTGAGTAATGTTAAAACAAAAAAGGATCAAATGCTTAAAGATGAGATCAAAGTATTGCAACAAAAGGGAATCCTCATTCATCAACAAAATGAAGAACTTCGTACGAAGATAAACCTTTTACATGAAAATAATGCAGAACTACAGAAGGTTATTGAAGCAAGGGATATGGAAAAAGAAAAGGCAACATGCTATCAGCAATGGATATGA 606 0.3762 MGRGKIPIQRIENSTNRQVTFCKRRNGLMKKTRELSILCDAEVGVIVFSSTGKLYEYSNTSMKSIIDRFNKLNEDHGWLMDPASSVKFWQREAACLRQQLERLQESNSQLMGEELSDLNINQLKDLENKLQIGLSNVKTKKDQMLKDEIKVLQQKGILIHQQNEELRTKINLLHENNAELQKVIEARDMEKEKATCYQQWI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1558 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vra7g1558 201 Coils Coil 163 183 - -
Vra7g1558 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 Coils Coil 86 113 - -
Vra7g1558 201 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Vra7g1558 201 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1558 201 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vra7g1558 201 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1558 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Vra7g1558 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vra7g1558 201 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 196 - -
Vra7g1558 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1558 Vra-Chr7 33728557 33743590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1558 1 182 MADS-box Gene Family AT4G37940 53.846 2.31e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g1558 K-box 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1558 K09264 - gmx:100779119 287.345