Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1557 ATGGGTAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACCAGCCGCCAAGTGACGTTTTCCAAGAGAAGAACTGGGTTGGTCAAGAAAGCTAGAGAACTGTCTATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCCAGTTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGGTCAAAGAGGACCATCATCAGTTAATGAACCCTGCTTCAGAAATCAAGTTTTGGCAGAGAGAAGTAGCAAGTTTGAGGCAACAAGTGCAGTACATGCAAGAATGTTACAGGCAAATGATGGGCGAACAACTTTCTGGTTTGGATATTAAGGAGTTGGGGAATCTGGAAAATCGACTGGAGAGAAGTTTGAAGGGTGTTCGCATGAAAAAGGATCAAATTCTGGTTGATGAGGTCAAAGAACTACACCAAAAGGGAAGCCAAGCCAAACAAGAAAATGCCGAACTTCATAGAAAGATAAATCTCATGCTCAAGGACAACGAAGAACTACAAAAGGTTATTGAAGCAAAAGGTAGAAAGGAAGGTGCTGCAACATCAATTCCTTCTTGCACTATCAGTTATGGATATGATATATTTGCTCCTATCAGTCTCAAGCTAAGCCAGCCACATCACAGTGAACCACAAGCCAAAGCAATGAAACTGGGATTAAGCGCCACGTAG 711 0.4205 MGRGKIVIRRIDNSTSRQVTFSKRRTGLVKKARELSILCDAEVGLIVFSSTGKLYDYASSSLKSVIDRYNKVKEDHHQLMNPASEIKFWQREVASLRQQVQYMQECYRQMMGEQLSGLDIKELGNLENRLERSLKGVRMKKDQILVDEVKELHQKGSQAKQENAELHRKINLMLKDNEELQKVIEAKGRKEGAATSIPSCTISYGYDIFAPISLKLSQPHHSEPQAKAMKLGLSAT* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1557 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 Coils Coil 149 183 - -
Vra7g1557 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vra7g1557 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1557 236 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vra7g1557 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Vra7g1557 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Vra7g1557 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g1557 236 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1557 236 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vra7g1557 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1557 Vra-Chr7 33693624 33706383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1557 1 233 MADS-box Gene Family AT2G14210 59.574 1.11e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g1557 K-box 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1557 K09264 - gmx:100779647 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1557 7 33693624 33706383 Vra10g1454 10 19572512 19584609 PCT