Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1556 ATGGCTTGGTGGCATAAGACTGTTCATAATCCAATTCTTTTCTGTCATGCAATGAGAACAATTTTCATCCTTCAAATACTCCCTTTTGCAAACTCACTATCATTTGACTACCCCAACTTTAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTATGTTCTGAAAGGAGCTATCCAAGTCACTTCCAACACCATAGACCAAAACAACAATTACAGTGTTGGGAGAGTCACGAGTTTTGAACAGATGGTCCTCTGGGATATGAACTCTAGAAAGCTTGCTGATTTCACTACTAAATTTTCCTTTGTTGTCTTTTCAGAAAAGAGATACTATGGAGATGGAATGGCCTTCTTCCTTGCTGACCCTAATCTCCCACTTCTAAAGGATATTAAAGAAGGAGGTGGTCTTGGACTTGTGGATGGCGAACAAGTACTGAATTCAACTCAACACCCGTTTGTAGCAGTGGAGTTTGACACCTTCCACAACGAATTATGGGACCCTTCGGGTAGCACTCATGTAGGTCTGAATTTCAACTCTATGAAGTCCAACATAACTAAGTCATGGTTGACAGATATTCAAATTTGGAATGTTTATAATTGCAGCATTAAGTACAATTCAAGTACTCTAAATTTGAGCGTTTCATTCACTATGTACAATGATAGTAAAGCAGTTGAAGAATACATTTCATACAAGGTTGATTTGAGAGATCATTTACCAGGGAGGGTTATTCTTGGTTTTTCTGCCGCAACAGGAAGATTGTATGAGGTGCATACATTAAGATCATGGTCATTTAGTTCAAGTCTACAAACCGATGACAAAACAAATGAGGCAAAACCAGAAGCAGTCCCACCAGATTCCAGTCTTATTGATTCTAAAAAAGGAAAGAAAATAGGATTGTGGGTAGGGCTTGTAATTGGTCTTGGCTTGATTTTGAGTTTGTCAGGGTTGGTTTATACTTTCTTGTGGAAGAGGAGTAGAGATAGAAAAGAAGTGTTAGTTTTTGATGATGAATTCCCAAAGGGCACTGGACCTAAGAGCTTCTCCTATAATGAGCTAGCAAGTGCTACAAACAAATTTGCTGAGTCTGAGAAGCTGGGGCAAGGTGGTTTTGGTGCTGTGTATAAGGGTTATTTGAAAGACATTAAGTCCTATGCTGCTATCAAGAGAATATCAAGAGAGTCTAGACAGGGAATGAAGGAGTATGTGACAGAAGTGAAGGTAATAAGCCAATTGAGACATAGGAATTTAGTACAACTTATTGGTTGGTGTCATGAGAAGAATGACTTTGTCCTTGTATATGAGTTCATGCCAAATGGAAGCTTAGACTCTCACCTTTATGGAGTGAAAAGCTTCTTAACTTGGAGAGTGAGGTATAATATAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGAGATATTAAATCAAGCAACATTATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGATCATGAGAAAGGGTCACAAACCACACATATAGCAGGGACTAGGGGCTATATTGCACCTGAATATTTCAGTTCAGGAAAGGCTACTAAGGAATCTGATATTTACAGCTTTGGGGTTGTGTTGTTGGAGATAGCTTGTGGAAGAAAATGTGTTGAACTAAAAGCTGAGGAGGGTGAAATAACTCTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGGAGGTCACTTGAAGCAGTTGACCCAAAGTTATGTGGAGAATTTGATGAGAAGCAAATGATCCGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTACTCATTCAGGCCCTCTATAAGGCAAGTGATTCAGGTCCTTAAATTTGATTCTCCTTTACCTCTTCTCCCAGAAATGATGCCTGTGCCAACATATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCTTCTTTCTTTTGGGAAGCAAGTTAG 1998 0.3964 MAWWHKTVHNPILFCHAMRTIFILQILPFANSLSFDYPNFKNGDVKWEGDAYVLKGAIQVTSNTIDQNNNYSVGRVTSFEQMVLWDMNSRKLADFTTKFSFVVFSEKRYYGDGMAFFLADPNLPLLKDIKEGGGLGLVDGEQVLNSTQHPFVAVEFDTFHNELWDPSGSTHVGLNFNSMKSNITKSWLTDIQIWNVYNCSIKYNSSTLNLSVSFTMYNDSKAVEEYISYKVDLRDHLPGRVILGFSAATGRLYEVHTLRSWSFSSSLQTDDKTNEAKPEAVPPDSSLIDSKKGKKIGLWVGLVIGLGLILSLSGLVYTFLWKRSRDRKEVLVFDDEFPKGTGPKSFSYNELASATNKFAESEKLGQGGFGAVYKGYLKDIKSYAAIKRISRESRQGMKEYVTEVKVISQLRHRNLVQLIGWCHEKNDFVLVYEFMPNGSLDSHLYGVKSFLTWRVRYNIALGLASALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTHIAGTRGYIAPEYFSSGKATKESDIYSFGVVLLEIACGRKCVELKAEEGEITLVEWVWKLYGLGRSLEAVDPKLCGEFDEKQMIRLVVVGLWCVHPDYSFRPSIRQVIQVLKFDSPLPLLPEMMPVPTYLPPTIKALFSSVSSFFWEAS* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1556 665 Gene3D - 30 289 - -
Vra7g1556 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vra7g1556 665 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
Vra7g1556 665 ProSitePatterns Legume lectins beta-chain signature. 152 158 IPR019825 -
Vra7g1556 665 CDD STKc_IRAK 364 628 - -
Vra7g1556 665 Pfam Protein kinase domain 359 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1556 665 SMART serkin_6 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1556 665 SUPERFAMILY Protein kinase-like (PK-like) 342 650 IPR011009 -
Vra7g1556 665 ProSiteProfiles Protein kinase domain profile. 358 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1556 665 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 18 663 - -
Vra7g1556 665 PANTHER - 18 663 - -
Vra7g1556 665 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 273 IPR013320 -
Vra7g1556 665 CDD lectin_legume_LecRK_Arcelin_ConA 33 267 IPR001220 GO:0030246
Vra7g1556 665 Gene3D Transferase(Phosphotransferase) domain 1 435 646 - -
Vra7g1556 665 Gene3D Phosphorylase Kinase; domain 1 343 434 - -
Vra7g1556 665 Pfam Legume lectin domain 32 276 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1556 Vra-Chr7 33661734 33663953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1556 22 645 Receptor kinase-like Gene Family AT5G10530 48.589 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra7g1556 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1556 - - gmx:100780181 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1556 7 33661734 33663953 Vra7g1556 7 33661734 33663953 ECH
Vra10g1455 10 19591338 19593299 Vra7g1556 7 33661734 33663953 PCT