Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1553 ATGGCAGGTGGTGATTGGCCTTTTGGTCTTTATGCAATCACTCTAGGGTTTTGTTATGCAAGAGGAACCTTTGTGTTCCTCTTGATAATCCCTCTTGAAAAGGCTCATTCACAACCGTTTTCTTTCTATTACAATTTCAGAAACGCTGCGGACGTAGAAAAGGTATACCTTGAAGGAAATGTTTCTGTTTCAAATTCTGGCATCAACCTCGCAGTGGACTCAAACCATGGTGGAACTGGGAGTGTTGGGCGAGTAACAAGTCCCCAGTTTATCAAACTATGGGACAAGACATCGAAGGAACAAGAAAGCTTCGTCACCCAGTTTTGCTTTATGATCATCCCAAACAAGAGTTCTCGTGGAGACGGTTTTGCTTTCTTTATAGCAAACCCTAACCTCCCAAATGTGGATACAACGGATGAAATGAAGCGTGGAGGCCTTGGCATTGGTATGGTGAATGACACAGCACCTCTCTCAACCCGATTTAATGATTATCAATATGTGGCAGTGGAGTTTGACATTTTCTCAAACGAGTGGGACCCTCGGGACCCACATGTTGGTATGAATGTAAACTCTATGCGCTCTGAGGTAGTTGAGAATTGGAGAATAGATAATACTTCAAGAGGCCCTTATAAGTGTACCATTAAGTACCACTCCCAAGATCAATTCCTGAACATTTCTTTCACTGGAATCTTGCCCGATGGAAAGCGAGTAACACAGCACCTTCTTTACCACATTGATTTGGGAAACTACTTAGAAGAGATGGTTGTTGTAGGTATATCAGCTGCAACAGGAGATGGATTTGATCAGTATACCTTGCTCGAATGGTCATTTAGTAAAATAACACGTAATGATAAGAAAGAGCTCGATAAGACGATGTTGTTGGAGGGAATAGGAGTTGGTTTAGGTGGGGCTGTGAGTTTCTTCGTGTTGCTCCTCCTTGTATTGAGGAAGAGGGGCGAGAAAGAAAAGGAAGAAGCCACTTCAGAAGCCTCTTCTGATTTGAAAATGGATGATGCGTTCAAAATGTGCACTGGACCTAAGGAGATCAGATACGAGGTTTTGGTATCTGCGACAAACAACTTTAAAGAGAGACACAAGCTGAGGCAATGTGTTTTCAAAGGTTATTTCAAAGACATAAACACTTATGCTGCAATACAGAGGATATCAGCCGGTTCATCACATGGTGTGAAGGAATATGCAGCGGAAGTAAGGATCATTAGCCAATTGAGGCACAGGAATTTGATGAAACTCAACGGTTGGTGCCACAAGAAGAATAACTTCTTTCTGATATATGACTACATGCCAAATGGCAGCTTGTATTCTCATCTTTTTCATAGGGAGAGTATCTTATCGTGGCATGTGAGGTACAACATAGCTCTAGGCTTGGCCTCAGCATTGTTTTACCTACAAGAAGAGTTTGAAAAATGTGTGTTTCATAGGGACATCAAATCAAGCAACATACTCTTGGACTCTAATTTCAGTGCTAAGCTTGGGAATTTTGGCCTGGCAAGGCTTGAGGGTCGTGAGAAAAGGTCAAAAACAACAGTTATAGCTGGAACAACGGGTTACCTTGACCCAGAATATATTATCACAGGCAAGGCTAGAAAGGAATCTGACATGTTCAGCTTTGGAGTTGTTTTGTTGGAGGTAGCAAGTGGAAGAAAAGCCAATGACCAAGAAGAGAAAGAGGGTCAACCTCAAGTATCACTAGTTGAGTGGGTGTGGGAGCTCTATAGACATGGAAATCTCCTTGCAGCAGCAGATCCAAACCTGAATGGGGAATTTGATGTGCAGCAGATGGAATGCTTGCTTGTTGTTGGTGTTTGGTGTGCTAATTCAGATAGCAAGACAAGGCCCTCTATAAGGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTTCCTATTCTCCATCACCACCTATCTCCCTCCAACAACAACAGATGA 1947 0.4253 MAGGDWPFGLYAITLGFCYARGTFVFLLIIPLEKAHSQPFSFYYNFRNAADVEKVYLEGNVSVSNSGINLAVDSNHGGTGSVGRVTSPQFIKLWDKTSKEQESFVTQFCFMIIPNKSSRGDGFAFFIANPNLPNVDTTDEMKRGGLGIGMVNDTAPLSTRFNDYQYVAVEFDIFSNEWDPRDPHVGMNVNSMRSEVVENWRIDNTSRGPYKCTIKYHSQDQFLNISFTGILPDGKRVTQHLLYHIDLGNYLEEMVVVGISAATGDGFDQYTLLEWSFSKITRNDKKELDKTMLLEGIGVGLGGAVSFFVLLLLVLRKRGEKEKEEATSEASSDLKMDDAFKMCTGPKEIRYEVLVSATNNFKERHKLRQCVFKGYFKDINTYAAIQRISAGSSHGVKEYAAEVRIISQLRHRNLMKLNGWCHKKNNFFLIYDYMPNGSLYSHLFHRESILSWHVRYNIALGLASALFYLQEEFEKCVFHRDIKSSNILLDSNFSAKLGNFGLARLEGREKRSKTTVIAGTTGYLDPEYIITGKARKESDMFSFGVVLLEVASGRKANDQEEKEGQPQVSLVEWVWELYRHGNLLAAADPNLNGEFDVQQMECLLVVGVWCANSDSKTRPSIRQVIKVLNFEAPFPILHHHLSPSNNNR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1553 648 CDD lectin_legume_LecRK_Arcelin_ConA 40 278 IPR001220 GO:0030246
Vra7g1553 648 Pfam Legume lectin domain 43 289 IPR001220 GO:0030246
Vra7g1553 648 Pfam Protein kinase domain 371 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1553 648 SUPERFAMILY Protein kinase-like (PK-like) 346 632 IPR011009 -
Vra7g1553 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vra7g1553 648 PANTHER LECTIN RECEPTOR KINASE 23 640 - -
Vra7g1553 648 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 279 IPR013320 -
Vra7g1553 648 SMART serkin_6 361 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1553 648 Gene3D Phosphorylase Kinase; domain 1 346 433 - -
Vra7g1553 648 CDD STKc_IRAK 370 629 - -
Vra7g1553 648 Gene3D - 39 296 - -
Vra7g1553 648 ProSiteProfiles Protein kinase domain profile. 361 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1553 648 PANTHER - 23 640 - -
Vra7g1553 648 Gene3D Transferase(Phosphotransferase) domain 1 434 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1553 Vra-Chr7 33574757 33576703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1553 24 637 Receptor kinase-like Gene Family AT5G10530 40.665 2.46e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra7g1553 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1553 - - cam:101492002 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1553 7 33574757 33576703 Vra7g1553 7 33574757 33576703 ECH