Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1552 ATGGCAGTATCTTGCTACTGTAAGAAAAGTTATGTACGTGTTTGTTTAACATTAACGCTCTTGCTTCTTGTAACACCTCATGCAGCTTCATTGGAATTCAACTATCAGAAATTTGGTGACACCAGAAACGTCTTCAATACTTCGGGAGATGTTAAACCTCGACAAGGAGTGCTAAAACTCACCAAAAATGAAACATCCAGTTATGGTAGAGTCATATTTCCCAAACTATTGCATCTTTGGGACATAAACTCAGGGAAAGTCACGGATTTCACTACCCATTTCTCCTTTAGCATCAGCGCCTTAAATAAAACACATGCAGACGGCATCGCCTTCTTTCTGGCACATCCAGGCTTTCCATCGGTTTCCCCAAGAGATGGAGCTGGTATTGGTCTTGCCAGCCGTGATCAACTCAGAAATCAAAGCTACAAATTGGATCATCCATTTGTGGCAGTGGAATTTGATACCTACGCTAATCCATGGGAGCTTCAGTCGTATCCCCATGTGGGTATCGATATCAATTCAATCGTATCTTCTGCGACTGCAGAATGGTTCACCAGCGCGTCTGAGAGTGGATACGAGGCTGATATTAGTTTCGATTCCAGTTCAAACAAATTAAGTGTCACCTTTACTGGGTATAAGGCGGACGTCGTAGTTCAAGGGAACTTATCCTATGTTGTCAATCTGAAAGATGTCTTACCTGATTGGGTTGAATTTGGCTTTTCTGCAGCAACAGGAGATTATTACGACGTATATGCTCTTAGCTCATGGTCCTTCAGCTCTAGTTTTCACATGGAAGCAAATAAGGGTGGAACAAAAAGAGGGCTGGTGATAAGGCTGAGCCTTGGAATTGGTGCAGGTATTTTAATTGTTATTTTGGTGGTAACTTTTCTTGTGAGATGGATGCTGAGGACAACGGGCATGGAAGATGCCTCACTTTTTGACCATGCCATGGACAATGATTTCGAAAAAGTCTCTCTACCCAAGAAGTTTTCCTTTGAAGAACTGGCCAGAGCAACTAATAACTTCGCTAGAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCCGTCTACAGGGGATTTATTAAAGAGTTGAACAACGATGTTGCCATCAAGAAGGTATCTCGTGAATCTACACAAGGGATGAAAGAGTACATATCTGAAGTAAAGATCTTTGGTCAACTGAGGCATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATGAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAGGTGAGATACAATATTGCGAGAGGGTTGGCATCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCCAATTATAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGAGATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTATCACAAGAGGCAAGGCTAGTAGGGAGTCCGATGTGTTCAGCTTTGGAGTTGTTGCTTTGGAGATAGCCTGTGGTAGAAAGACTGTTGAAGGTAATAGGGTAGAAGATAATATTTATTTGGTAGATTGGGTTTGGAAACTCTATGGCATGGGTGAACTCCTCAAAGCCTCTGATCCAAGCTTATATAGACATTATGATGAGAAGGAAATGGAGACTTTACTGATAGTTGGCCTTTGGTGCACTCACACAGATTACCTTCAGAGGCCTACTATGAGGCAAGCAGTTCAAGTGCTTAGTTTTGAAGTGCCAATGCCCACACTCACACAACGGGTGCCCATTCTCTGA 1884 0.4241 MAVSCYCKKSYVRVCLTLTLLLLVTPHAASLEFNYQKFGDTRNVFNTSGDVKPRQGVLKLTKNETSSYGRVIFPKLLHLWDINSGKVTDFTTHFSFSISALNKTHADGIAFFLAHPGFPSVSPRDGAGIGLASRDQLRNQSYKLDHPFVAVEFDTYANPWELQSYPHVGIDINSIVSSATAEWFTSASESGYEADISFDSSSNKLSVTFTGYKADVVVQGNLSYVVNLKDVLPDWVEFGFSAATGDYYDVYALSSWSFSSSFHMEANKGGTKRGLVIRLSLGIGAGILIVILVVTFLVRWMLRTTGMEDASLFDHAMDNDFEKVSLPKKFSFEELARATNNFARENKIGQGGFGAVYRGFIKELNNDVAIKKVSRESTQGMKEYISEVKIFGQLRHKNLVQLFGWCHEHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNYNAKLGDFGLARLMDHEIGSKTTVLAGTIGYLPPEAITRGKASRESDVFSFGVVALEIACGRKTVEGNRVEDNIYLVDWVWKLYGMGELLKASDPSLYRHYDEKEMETLLIVGLWCTHTDYLQRPTMRQAVQVLSFEVPMPTLTQRVPIL* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1552 627 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Vra7g1552 627 Pfam Protein kinase domain 343 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1552 627 Pfam Legume lectin domain 30 265 IPR001220 GO:0030246
Vra7g1552 627 PANTHER - 15 624 - -
Vra7g1552 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vra7g1552 627 PANTHER LECTIN RECEPTOR KINASE 15 624 - -
Vra7g1552 627 CDD lectin_legume_LecRK_Arcelin_ConA 31 248 IPR001220 GO:0030246
Vra7g1552 627 CDD STKc_IRAK 348 611 - -
Vra7g1552 627 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vra7g1552 627 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Vra7g1552 627 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Vra7g1552 627 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Vra7g1552 627 SMART serkin_6 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1552 627 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1552 627 Gene3D Transferase(Phosphotransferase) domain 1 419 625 - -
Vra7g1552 627 SUPERFAMILY Protein kinase-like (PK-like) 326 612 IPR011009 -
Vra7g1552 627 Gene3D - 29 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1552 Vra-Chr7 33559135 33561018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1552 21 626 Receptor kinase-like Gene Family AT5G10530 45.645 8.31e-174 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra7g1552 Pkinase 7.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1552 - - vra:106766340 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1552 7 33559135 33561018 Vra7g1552 7 33559135 33561018 ECH