Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1549 ATGTTGCGGCTTTCGATTCTACGAGCGAGAAAGTTGGACTTTATGAGGCCTCAGATCTCTGCACCGGGAAGGTCCCATTTCTCAACTGCTGTCGAACCATCTTCCAGTAAGAGCAATCCACCGAGGGTTCCAAATCTTATTGGGGGCAGATTTGTTGACTCAAAATCATCAACTGTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAAGTTCCTTTGTCTACGGATGAAGAGTTTAAGGCAGCTGTATCTGCAGCAAAGAAGGCATATCCATTATGGCGTAACACTCCAATTACAACACGCCAACGTGTTATGTTGAAGTTTCAGGAGCTTATACGCAGAGATATGGACAAACTTGCTCTGAATGTGACCACTGAGCAAGGAAAGACGTTGAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAATATGTTTCAAATGTTTCACATGGAATTGATACTTACAGTATTAGAGAACCACTTGGTGTTTGCGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTGGCTGTTACTTGTGGTAACACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTCATGCTTGCAGAATTAGCATTGGAGGCTGGTTTGCCAGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATTCTATTTGCGACGATGATGACATCAAAGCCATATCATTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAACATGGGAGCAAAAAATCATGCCATTGTCTTGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAGTTGCAGCTGGTTTTGGTGCTGCTGGTCAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGACGCAAAATCATGGAAAGCTAAACTTGTAGAGCGTGCCAAAGCTCTCAAGGTAAATGCGGGAACTGAACCTGATACAGACCTTGGTCCAGTGATCAGCAAGCAGGCAAAGGAGAGAATACACAGACTAGTTAAATCTGGTGTTGAAAGTGGTGCCAAATTACTGCTGGATGGAAGAAATATTGTGGTTCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTCACTACCAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTCCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAGCATTATCAATAGTAACAAGTATGGAAATGGTGCTTCAATATTCACCACATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATCGAGGCAGGCCAGGTTGGCATCAATGTTCCCATTCCAGTTCCATTGCCCTTCTTCTCATTCACTGGCAACAAGGCATCTTTTGCCGGTGATCTCAACTTCTATGGCAAGGCAGGGGTTAACTTCTATACACAGATCAAGACAATAACACAGCAATGGAAGGATTCAACTGATGGTAGCAAGATTAACATGGCAATGCCAACCTCTCAAAAATAA 1614 0.4318 MLRLSILRARKLDFMRPQISAPGRSHFSTAVEPSSSKSNPPRVPNLIGGRFVDSKSSTVIDVINPATQEVVSQVPLSTDEEFKAAVSAAKKAYPLWRNTPITTRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDIVNSICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVLPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGDAKSWKAKLVERAKALKVNAGTEPDTDLGPVISKQAKERIHRLVKSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDVTTNMECYKEEIFGPVLLFMEADSLEEAISIINSNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSTDGSKINMAMPTSQK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1549 537 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Vra7g1549 537 SUPERFAMILY ALDH-like 38 520 IPR016161 GO:0016491
Vra7g1549 537 MobiDBLite consensus disorder prediction 23 42 - -
Vra7g1549 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 496 IPR016162 GO:0016491
Vra7g1549 537 MobiDBLite consensus disorder prediction 23 43 - -
Vra7g1549 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Vra7g1549 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 25 537 - -
Vra7g1549 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Vra7g1549 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 25 537 IPR010061 GO:0004491
Vra7g1549 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Vra7g1549 537 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1549 Vra-Chr7 33451165 33458648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1549 1 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.511 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1549 K00140 - gmx:100791508 994.186