Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1548 ATGTCTTCTCTCTGGTTTCTTAAACTCATTGTCAAATGCCTTGATCATTGTGCATGGCCTCTCCTTGCTCTGGGATACCCTTTATGTGCTTCTGTACAAGCAATTGAGAACGAATCCTATAAAGCAACTAAGGATTTGATATCGTATTGGATACTCCTCTCGCTAATATACCTATTCGAGTATGCATTTTTTAGGCTTCTTCAATGGTACCAGTTCTGGCCTTACACTAAGCTAATGATCATCTTCTGGCTCATTGTGCCAGACTTTGGGCGGGCTTCTTATGCCTACAATAACATTATTCGAACATGCATCTCAAATCCACAAGCAATCTTAAGTAGTTTAAATAACTGGAGGAAGATTTTTGTCAAGAAAGATAACTTTTTGCTGCATGCAGATAGATATTTAGAAGATAATGGAACAGAAGCCTTAATGAAACTCATTGCTAGCAAGAACACGACTAACAAACCTGTTGCAAAGGCAACAAATGCAAATAGAGCTACTGACCATGAAGAGATGCAACAGACAAATGTGAAAAAGCTCCAAATAGAGCCCAACGCCACCAAAGATTTGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAATCAAAATATTCCTGTGGTACCTAAACTTGTGAAAAGTGAAAATGCTTCAGCAACCATGTTGGAAACTAATGGAATAGTGATGAAAGAGAAGGGTGTTGGAGAGCTTCCTCAGATTTTTACACATAAGGAAGTTCAGAAGGAGTGGACTTGCGCTTTGTGCCATGTAACAACAACGAGCGAGAAAACCTTGAATTCACACCTGCAAGGGAGCAAACACAGGAAGATGGAGATTGCTCTGAAGGCAAAGAATCAACCTGTTTCACAGAAGCTGAAAAGTGATCACTCCAAAGAAGAATTGAAACAGAAGAACATTTATCAGCCAAAATTCAAGACCAAGAATGGAGAGAAACCTACTAGGACTAATAATTCAGAAATAAGATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTGGCCTCTCATAGAAAAGGGAAGAAGCATTTGGATAAAGTTAAAAGTAACAGGTTTCTTTAG 1086 0.3895 MSSLWFLKLIVKCLDHCAWPLLALGYPLCASVQAIENESYKATKDLISYWILLSLIYLFEYAFFRLLQWYQFWPYTKLMIIFWLIVPDFGRASYAYNNIIRTCISNPQAILSSLNNWRKIFVKKDNFLLHADRYLEDNGTEALMKLIASKNTTNKPVAKATNANRATDHEEMQQTNVKKLQIEPNATKDLEVIEKKEIPTGNQNIPVVPKLVKSENASATMLETNGIVMKEKGVGELPQIFTHKEVQKEWTCALCHVTTTSEKTLNSHLQGSKHRKMEIALKAKNQPVSQKLKSDHSKEELKQKNIYQPKFKTKNGEKPTRTNNSEIRCEICNVKCPCEITLASHRKGKKHLDKVKSNRFL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1548 361 Pfam Zinc-finger of C2H2 type 328 351 - -
Vra7g1548 361 Pfam Zinc-finger of C2H2 type 250 274 - -
Vra7g1548 361 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Vra7g1548 361 SMART ZnF_U1_5 324 358 IPR003604 GO:0003676|GO:0008270
Vra7g1548 361 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 305 - -
Vra7g1548 361 SUPERFAMILY beta-beta-alpha zinc fingers 244 286 IPR036236 -
Vra7g1548 361 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Vra7g1548 361 PANTHER HVA22-LIKE PROTEINS 1 305 IPR004345 -
Vra7g1548 361 Gene3D Classic Zinc Finger 232 279 - -
Vra7g1548 361 Gene3D Classic Zinc Finger 289 358 - -
Vra7g1548 361 SUPERFAMILY beta-beta-alpha zinc fingers 316 357 IPR036236 -
Vra7g1548 361 SMART c2h2final6 250 274 IPR013087 -
Vra7g1548 361 SMART c2h2final6 327 351 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1548 Vra-Chr7 33442736 33445883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1548 221 360 C2H2 Transcription Factor Family AT2G19380 30.556 5.63e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1548 - - pvu:PHAVU_002G214600g 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1548 7 33442736 33445883 Vra7g1548 7 33442736 33445883 ECH