Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1539 ATGGATACAGTGAATAATCACAGCCAAAACGGGGAAGAGCAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGCAGGTGGTTCATTACTCCAATGGTTCCTATGAAGGGGAAGAAGCAGCCACTCCAGTTGGCCATGCTTCAACTGCTATGCACGCCCGAACCAGTGAACTCACCATTTCCTTTGAGGGTGAAGTTTATGTTTTCCCTGCTGTTACCCCACAAAAGGTGCAGGCAGTATTATTACTTCTGGGAGGGCAGGAGACACCAAATACTGTCCCGACCCCAGATTTTTTGTTGCAGCAAAACAGTCAGGACATTAGGGAAATAAATGATCCTTCCAGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGATACACATGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCAAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTATTATCGGAACTGCTGAATCAGTTACTGACAAATTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTAATGCTTCAGGGACCGAGTTTGAGATTTCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGATCTAG 1062 0.451 MDTVNNHSQNGEEQPPPPGTALAMQVVHYSNGSYEGEEAATPVGHASTAMHARTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNELDTSADIKPSKAEAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFIIGTAESVTDKLSIQVENHALSLHEQDTLEDLANASGTEFEISAGFDEQVDIDDSNMRTYWLI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1539 353 Pfam tify domain 53 84 IPR010399 -
Vra7g1539 353 ProSitePatterns GATA-type zinc finger domain. 190 217 IPR000679 GO:0006355|GO:0043565
Vra7g1539 353 ProSiteProfiles GATA-type zinc finger domain profile. 184 241 IPR000679 GO:0006355|GO:0043565
Vra7g1539 353 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g1539 353 Pfam GATA zinc finger 190 226 IPR000679 GO:0006355|GO:0043565
Vra7g1539 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 238 - -
Vra7g1539 353 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 31 343 - -
Vra7g1539 353 SMART tify_2 50 85 IPR010399 -
Vra7g1539 353 SMART GATA_3 184 237 IPR000679 GO:0006355|GO:0043565
Vra7g1539 353 ProSiteProfiles Tify domain profile. 50 85 IPR010399 -
Vra7g1539 353 Pfam CCT motif 121 162 IPR010402 GO:0005515
Vra7g1539 353 CDD ZnF_GATA 189 232 IPR000679 GO:0006355|GO:0043565
Vra7g1539 353 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Vra7g1539 353 PANTHER GATA TRANSCRIPTION FACTOR 28 31 343 IPR045280 GO:0006355
Vra7g1539 353 MobiDBLite consensus disorder prediction 247 285 - -
Vra7g1539 353 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g1539 353 Gene3D - 182 242 IPR013088 GO:0006355|GO:0008270
Vra7g1539 353 MobiDBLite consensus disorder prediction 247 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1539 Vra-Chr7 33255102 33261196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1539 56 233 Tify Gene Family AT1G51600 57.838 2.97e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g1539 CCT 5.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1539 - - gmx:102669848 585.104