Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1523 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGATATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGATTGGATCGTCCTTCTATGGAACAGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCATGAATTGAGGCAGTTGAATGGAGAGGATCTGCAAGGATTGACACTGCAAGAACTGCAGAAAATTGAGGAAAATCTTAAAAGGGGTTTGACCAATGTTTTAAAAGTAAAGGATGATAAAGTTATGCAAGAGATCAGAAACCTTAAAAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGATTGAAACAGGTACCAAGCCTTATCCAGTTACACAGGCAATCATCGGAATCCATTATTAGCAATTCGTCTAATCTTCCTGAAGATGGTTATAGCGACACATCTCTCAAGTTGGGGTTACCTTAA 615 0.4016 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERRDRHSAMHRLDRPSMEQQIESDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEENLKRGLTNVLKVKDDKVMQEIRNLKRKGVELMEENQRLKQVPSLIQLHRQSSESIISNSSNLPEDGYSDTSLKLGLP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1523 204 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vra7g1523 204 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1523 204 Coils Coil 92 112 - -
Vra7g1523 204 Pfam K-box region 89 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1523 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Vra7g1523 204 MobiDBLite consensus disorder prediction 183 204 - -
Vra7g1523 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 Coils Coil 148 168 - -
Vra7g1523 204 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Vra7g1523 204 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 185 - -
Vra7g1523 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g1523 204 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vra7g1523 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1523 Vra-Chr7 32948709 32958222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1523 1 204 MADS-box Gene Family AT2G22540 48.523 5.23e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g1523 K-box 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1523 - - gmx:100815814 341.273