Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1507 ATGTTTCTTCCTCTTACGTTAGATATAATCCTTGGTCAATGTTCCAACCTCTTCTCACCTAACCCTTCATTCATCCCTTCCAATCCAATCTCTTCTTCCGTTCCCTTGTTGCCCTTATTCTCTCAGATGGAGCTGCATCACAGAAAGTTACTTGAGCTTCCAGATACTCCTGGTTACGTTAAACCAACTCCCAACAACCACAAAACCACATTCTTGATCGTCGGCTTTTCCGTTGTAGCCGCCGTTTTCGTTGTCCTCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTTCTAGGAACAGGTCTGTGAGGAGAAGCTTGTCACGGCCTCAAACTGAGGAAGATTTCTTGGACGAAGAAGCACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACCGGCCTCCAACAATCAGTGATCGGTTCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCCGTTTGTTTGAGCGAGTTTGAAGAGGACGAAAGTCTCAGGCTTTTGCCTAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTTACTGACCCCACAAGGGTTCCTTCCATGGACACCAATGCTTTTGTGGAAGTGGAGAGTGGTAGCGGTGGTGGAGAAGAACATAATCATGTTCAAGCTCAAGCTCAACCCCAACATGGTGATGATTTTTTGAGGGGTGAGGAAGAGGGAGAAGTTGAAGTGTGTGAAACTGAGAACATGGCTTCAGAAGTGATCGCTGTGCAACCAAGAAGATCAGTGTCTCTTGATTCTTCTTCTGCTGCTAAGATCAGTCTTCCTCTTGCTACTGTTGTGTCAGGAGATTCTCATGGAAATAATTCAAAGAGAATTAAAGGTGGTTGCAGTTCTTCTTCTTCTTCTTCTTCTTCCATCAAAAGGTCACGATCCTTCAATGCCAAGCACTTAATATCATGGTATGGGCGCAGCCAGAGAAAGCCAAATGCTCCATTGAGAAGCTTCTGA 1065 0.462 MFLPLTLDIILGQCSNLFSPNPSFIPSNPISSSVPLLPLFSQMELHHRKLLELPDTPGYVKPTPNNHKTTFLIVGFSVVAAVFVVLCSYAIYVKFFSSRNRSVRRSLSRPQTEEDFLDEEAHGPVVDHPIWYIRTTGLQQSVIGSITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDTNAFVEVESGSGGGEEHNHVQAQAQPQHGDDFLRGEEEGEVEVCETENMASEVIAVQPRRSVSLDSSSAAKISLPLATVVSGDSHGNNSKRIKGGCSSSSSSSSSIKRSRSFNAKHLISWYGRSQRKPNAPLRSF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1507 354 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 55 343 IPR044675 -
Vra7g1507 354 PANTHER RING-H2 FINGER PROTEIN ATL54 55 343 - -
Vra7g1507 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 212 IPR013083 -
Vra7g1507 354 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Vra7g1507 354 SUPERFAMILY RING/U-box 154 212 - -
Vra7g1507 354 SMART ring_2 163 204 IPR001841 -
Vra7g1507 354 Pfam Ring finger domain 162 205 IPR001841 -
Vra7g1507 354 MobiDBLite consensus disorder prediction 299 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1507 Vra-Chr7 32396894 32398452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1507 62 261 C3H Transcription Factor Family AT1G72220 44.231 6.72e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1507 - - vra:106767242 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1507 7 32396894 32398452 Vra7g1507 7 32396894 32398452 ECH
Vra7g1507 7 32396894 32398452 Vra5g0551 5 7090270 7095238 PCT