Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1500 ATGGCGGCAGGGCGAAAAAGTGTTCCGCTAAAAGGGGAATTTTTCAAATACAGTTCAACAAAGAGATCTGATCACTATAAGAATGGCTCTTTCGGCGTGGAAGTGGGTGGATCTCGCAGCCATCACTTTGCTCGTTCCGATGAGCCTCGTGGTGGGAAAGAGGAGAGAGAGCAAGGTGAGATCTGTGTTGAAGATGAGGAATATGAGGTTGCCTATGGTTTGCCACCGCCACAGAAGAAAAGGAAGTTTTCTCCAATCGTATGGGACCTAGCAGAGAAGGAAGAAAGAATTTCGTCCGAGAGTAGGATCTCGGATACTGTTGCTCTGTCTCCTCCTCGTCCATCTGTGCTGAGCACTCCTGGAGCCAACGATCTTGGTTCAGATGTCCTTTTGGAGGAATCTTTGCCAGATTCTGGAAGCTGTAGACAGGATGTGGAGGAAGAGAAGGATGTGCAAGAATGGACTATCAGAAAGTCAAGATGGGCTACTGATGATGGCCCCTCACCCATGGCTGCTGATGATAAATTCAATCATGTCAAGGGCAGCTGCAGTCCTGAAATTGGTGAATTCCATCGCGGTGGATCTTCAGAAAGCACCGTCACTAGATCGTCAGGAAGCACGGGGAGAGATCAATATCTTGGACTTTCTACCGATGACGCCGATTCTGAAAGGGATTTCCATATAGACCCCGTGGTCGATGTTGAGGGACCAAGTGACGTTGGTGATTGTCCATCGGATTCTGAAGAGAGTGATGGATTGATGCAAGTGCAGAGAAATATAAATATGCTTCACAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAATTGGTCGCATTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCTATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAACCACCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTCAAGGGAATGATGGAGATTAAGAAACAGCCTTTTAGCATTAGCGAAATTAAATCCTTGGTAAAGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCAAACATTCTGCTGAACCATGACGGGGAGCTTAAAATATGCGATTTTGGGTTGTCAAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCAGTTGTGGTTACACTATGGTACAGGGCACCTGAACTTTTGTTGGGTGCTAAAGAATATTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTTCCAAGGAGCCCCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATCAGATTTTTAGAACCCTGGGTACACCTGATGAGAAAATTTGGCCTGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTCAAGCAACCGTTTAATATGTTAAGGAAGAAGTTTCCAGCTGCATCATTTACCGGTTTGCCAGTTTTATCTGAGCTGGGGTTTGACTTGTTGAAGAAGCTTTTGACTTACGACCCCGAAGAGAGGATAACTGCTGAAGATGCTCTCCTTCATGATTGGTTCTACGAAGCCCCTCCTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG 1746 0.4399 MAAGRKSVPLKGEFFKYSSTKRSDHYKNGSFGVEVGGSRSHHFARSDEPRGGKEEREQGEICVEDEEYEVAYGLPPPQKKRKFSPIVWDLAEKEERISSESRISDTVALSPPRPSVLSTPGANDLGSDVLLEESLPDSGSCRQDVEEEKDVQEWTIRKSRWATDDGPSPMAADDKFNHVKGSCSPEIGEFHRGGSSESTVTRSSGSTGRDQYLGLSTDDADSERDFHIDPVVDVEGPSDVGDCPSDSEESDGLMQVQRNINMLHSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEIKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELISKEPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELGFDLLKKLLTYDPEERITAEDALLHDWFYEAPPPKSDFKPIFPSWRC* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1500 581 SMART serkin_6 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1500 581 MobiDBLite consensus disorder prediction 231 250 - -
Vra7g1500 581 SUPERFAMILY Protein kinase-like (PK-like) 266 567 IPR011009 -
Vra7g1500 581 MobiDBLite consensus disorder prediction 102 122 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 139 160 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 184 225 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 194 213 - -
Vra7g1500 581 Gene3D Phosphorylase Kinase; domain 1 254 353 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 40 59 - -
Vra7g1500 581 PANTHER CELL DIVISION PROTEIN KINASE 93 580 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 26 59 - -
Vra7g1500 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Vra7g1500 581 CDD STKc_CDC2L1 266 562 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vra7g1500 581 Pfam Protein kinase domain 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1500 581 PANTHER CYCLIN-DEPENDENT KINASE 93 580 - -
Vra7g1500 581 MobiDBLite consensus disorder prediction 95 172 - -
Vra7g1500 581 Gene3D Transferase(Phosphotransferase) domain 1 354 573 - -
Vra7g1500 581 ProSiteProfiles Protein kinase domain profile. 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1500 Vra-Chr7 32310019 32314604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1500 267 568 Core Cell Cycle Gene Families AT5G10270 44.654 1.12e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vra7g1500 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1500 K08818 - gmx:100788840 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1500 7 32310019 32314604 Vra7g1500 7 32310019 32314604 ECH