Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1498 ATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACATCTTCTGTTGCCGCCACCGGCCTTACCCTACGCGCCGTTCTCTTTCTTGCTCTCTCTCCTCTTCTTCCATCCCCGATACGGATGGCCCTAAAGTTCTGCGTAAGAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTTAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAATTATGATCGCTATATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACTCATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCACTAGATTCTCACACACCAATTTTTGCGTCATCCTTTACGATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCGTCACGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCAGGGCCATTTGAAATTGAGCCTATCACAGTGACTCATTCTATTCCTGATTGTTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAAACCGTTAGATGGAAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTAGCAGATGCGCTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCACTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAGGATATTGACGCATATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTATCAAGCTGACAAAGGAGGATATTGTGTTATATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTTTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTCGCTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGCGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAGATATTTCGCCCACAAAATTTAGACAGTCCAGATGAGAACACCTTAAAAGGAAAAATAAGAATTACAACAAGATGCCTGTGGCTTGACAAGGGCAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAGCGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAAGACGAAACTGTCTGGAAAATTCCATGTGGATGGGGCACCGACATTGAGAAAAGTGCTGGATGGACGTGGGAAAGAAAATCAGAGAACTAAAACACAAATAAGAGATCGAATTGATGTAGGGAGTATACTACCTATTGAAGACATTGCTATCTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGACTTTTTTAAACCACTTGTTGTATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTCAAAGGATGGTAGTTCTGAAGATACCGAAGAATGCAATTCTGTAAATACATCAGATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAACTGAATGACCGATTTCAAGTTGTTAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCCGGCCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGCAGGAGGTAAAGAATGAGAAAAATGGCAAGAAGAAATGGCCGTATCTTGAGGAAATGGAAAGGATTCTGTCTGATAGCGAGACACTGGCATCTAAATGA 2610 0.4172 MASCTSLSLCPHIFCCRHRPYPTRRSLSCSLSSSSIPDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDEKPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSIKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFASLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPDENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGAPTLRKVLDGRGKENQRTKTQIRDRIDVGSILPIEDIAISSGVEDDLSDAEVSDDFFKPLVVSSPVEKSIKANNGYVPQMEKSSPSKDGSSEDTEECNSVNTSDSEPKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEQEVKNEKNGKKKWPYLEEMERILSDSETLASK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1498 869 MobiDBLite consensus disorder prediction 731 776 - -
Vra7g1498 869 CDD GT1 775 837 - -
Vra7g1498 869 Pfam Myb/SANT-like DNA-binding domain 774 859 IPR044822 -
Vra7g1498 869 Gene3D - 777 838 - -
Vra7g1498 869 SMART Lactamase_B_5a 91 288 IPR001279 -
Vra7g1498 869 Gene3D - 280 430 IPR042173 -
Vra7g1498 869 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 869 - -
Vra7g1498 869 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Vra7g1498 869 ProSiteProfiles Myb-like domain profile. 769 833 IPR001005 -
Vra7g1498 869 CDD RNaseJ_MBL-fold 82 493 - -
Vra7g1498 869 Gene3D - 83 495 IPR036866 -
Vra7g1498 869 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Vra7g1498 869 PANTHER RIBONUCLEASE J 1 869 - -
Vra7g1498 869 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1498 Vra-Chr7 32282351 32302150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1498 777 860 Trihelix Transcription Factor Family AT3G25990 32.955 3.23e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra7g1498 Lactamase_B_2 1.4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1498 - - gmx:100814619 1562.74