Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1497 ATGAGTGTCATGCCTCAACAACCGCTTTTGAATTACACAGTGGAGGCTATTGGGACACTTTCTTGTACAAATGATGGCATATATCTTGTTGGAGGAGCTTTATCTGGATATGTTTATCTATGGGATGTGACCAGTGGAAAATTGTTGAAGACTTGGAGGGCTCATAATAAATGTTTAAACTGCATGTTATTTTCATTTGACAATTCTCTTCTCATTTCTAGCTCAGATGATGGAATGATTTGTGTTTGGTCCATGATTAGTTTGTTAGACATAGAAGAAACGAGAAGTTCGCCGCCTCCATTACATTATTTGTCTGGACATATATCCTCCATAACAGGTCTTTTAACTGCACCAAATAGTTACTACTCGATTTTAATATCAAGTTCCCTTGATGGCACGTGCAAGGTTTGGGATTTTATCTCAGGAAAGCATATGCAAACTCAAGTTTATCCTTTTGCCATAACTTCCATTGCCCTTCACCAAAGAGAAAGTCTTTTGTTTTGCGGAACAGAAAAAGGAATGATATTTGTCGAGAAGCTCGATGTTGGTGGTGGAGAAGGTCCTTTTCTTGTCATTAAAGGGCAGCCACTTGAACTGAAAGGACACAGTGGAGCCATTACTGCCTTAACCTCATCTCGATCATTCCTAATATCTGCCTCTGAAGATTGTTCGATTTGCATTTGGGACATCTTCAGTTGGGAAATCACTCGAAGGTTTAGTCTCCAAAAAGGGAAAGTAACCAATCTTGTGGTGGTTTCACGATCTTCGTTACTTTCTACATCAAAAAACAGGAGAGTCTCGAATGAATATATTATTTCTCCACTTGAAAAGTATCCGCAAATGTCCAACTCAATCAAGGGAACTCTCCATTCCTCATTATATAGAGGAAATCAAACTTGCATTGATTTGAAAAGTTCTGAATTATTGAAACAGAAGATTTTTGATACACAGAAAGATGTACCAACAATCACAACCTTGCAAATGAGAGTGGAAGCAAGTGTAAAGAATCATGTATGGGCAACAAACATGACAAAACATGTCATGGTGATAAACAAACAGTTGAAGTCAACACTATTAGGCATGATGCAGCATAGATTGTTTCGTCCAAACAACATCAACTTGCGAAAAACTAGTACAAAGAAACCCAAAATTTAG 1155 0.3784 MSVMPQQPLLNYTVEAIGTLSCTNDGIYLVGGALSGYVYLWDVTSGKLLKTWRAHNKCLNCMLFSFDNSLLISSSDDGMICVWSMISLLDIEETRSSPPPLHYLSGHISSITGLLTAPNSYYSILISSSLDGTCKVWDFISGKHMQTQVYPFAITSIALHQRESLLFCGTEKGMIFVEKLDVGGGEGPFLVIKGQPLELKGHSGAITALTSSRSFLISASEDCSICIWDIFSWEITRRFSLQKGKVTNLVVVSRSSLLSTSKNRRVSNEYIISPLEKYPQMSNSIKGTLHSSLYRGNQTCIDLKSSELLKQKIFDTQKDVPTITTLQMRVEASVKNHVWATNMTKHVMVINKQLKSTLLGMMQHRLFRPNNINLRKTSTKKPKI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 230 - -
Vra7g1497 384 SUPERFAMILY WD40 repeat-like 15 261 IPR036322 GO:0005515
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 10 51 IPR001680 GO:0005515
Vra7g1497 384 SMART WD40_4 45 84 IPR001680 GO:0005515
Vra7g1497 384 SMART WD40_4 141 179 IPR001680 GO:0005515
Vra7g1497 384 SMART WD40_4 192 229 IPR001680 GO:0005515
Vra7g1497 384 SMART WD40_4 97 138 IPR001680 GO:0005515
Vra7g1497 384 SMART WD40_4 5 42 IPR001680 GO:0005515
Vra7g1497 384 PRINTS G protein beta WD-40 repeat signature 71 85 IPR020472 -
Vra7g1497 384 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Vra7g1497 384 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 85 IPR001680 GO:0005515
Vra7g1497 384 Pfam WD domain, G-beta repeat 198 229 IPR001680 GO:0005515
Vra7g1497 384 Pfam WD domain, G-beta repeat 46 84 IPR001680 GO:0005515
Vra7g1497 384 Pfam WD domain, G-beta repeat 100 138 IPR001680 GO:0005515
Vra7g1497 384 PANTHER WD-REPEAT PROTEIN 18 5 383 IPR045227 -
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 85 - -
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 147 IPR001680 GO:0005515
Vra7g1497 384 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 5 383 - -
Vra7g1497 384 Gene3D - 1 177 IPR015943 GO:0005515
Vra7g1497 384 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Vra7g1497 384 Gene3D - 192 358 IPR015943 GO:0005515
Vra7g1497 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 238 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1497 Vra-Chr7 32270858 32273511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1497 32 230 U-box Gene Family AT2G33340 23.923 1.87e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1497 K14829 - gmx:102662801 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1497 7 32270858 32273511 Vra7g1497 7 32270858 32273511 ECH