Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1477 ATGGCCACGACAAGGTCACCTAACCATTCTTCCGAGGAAGGCGCCGATCCCACGCCGTTCCTCGGCTCCTCTTCCGATGATTCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCCAGCCTACGCGAGGCGGCGCGCTTCCTTCGGCAGGCGAGCGGACGCCGACTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCGAAGCCCGTCGTAATCTTGGATATTCTTTGGAACTTCGCGTTCGTTGTCGCGGCCGCCACCGTCTTGTTTCTTAGTCGCAACGAGAATCCGAATATGCCCCTGCGGTTGTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGCGTGTGTGTGCGTTGAGTACCGGAGGCGCCAGCGCCGCCGTGGACAGTCCAGCGCCGTCGTTTCTGTTGGCGTCAGCGTGACTGTTCACGGCAGCGGGGATTTGAGTTCGGCTTCGATAGAAGGCTCTGGACACTACGTGTCGTTGCCGCAGCTCGAGGACGACAGTATAAGTATGGCCAAGCATTTGGAATCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAGTGAAGCTCTGGTTCAACATTCTCCTCTGCTTTACTGGTTATGCATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATCATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGCAGGAAGGGGCGTCAAAAGAGGATATTGAGCAATTGTCAAAGTTCAAGTTCCAGAGAACCGAAATTAATGAGAAACTTGCTGGGAATACACAAGGAACTGCTGGAGGAATAATGACTGAATGCGATACTGATTCTCCCATTGAACATGTTCTCTCTGACGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGGGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTGTGCAAGTACAATATCTTGAAAAGTACCGGTCATGGTCAAGACGAAGTTTAG 1158 0.5181 MATTRSPNHSSEEGADPTPFLGSSSDDSNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVILDILWNFAFVVAAATVLFLSRNENPNMPLRLWIVGYAMQCVLHVACVCVEYRRRQRRRGQSSAVVSVGVSVTVHGSGDLSSASIEGSGHYVSLPQLEDDSISMAKHLESANTMFSFIWWVVGFYWISADSEALVQHSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQQEGASKEDIEQLSKFKFQRTEINEKLAGNTQGTAGGIMTECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTGHGQDEV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1477 385 CDD RING-H2_RNF111_like 329 373 - -
Vra7g1477 385 SUPERFAMILY RING/U-box 321 378 - -
Vra7g1477 385 Pfam Ring finger domain 329 371 IPR001841 -
Vra7g1477 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 385 - -
Vra7g1477 385 MobiDBLite consensus disorder prediction 1 37 - -
Vra7g1477 385 PANTHER TARGET OF ERK KINASE MPK-1 3 385 - -
Vra7g1477 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Vra7g1477 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 383 IPR013083 -
Vra7g1477 385 SMART ring_2 330 370 IPR001841 -
Vra7g1477 385 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1477 Vra-Chr7 32091827 32096184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1477 1 378 C3H Transcription Factor Family AT1G68070 47.244 7.04e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1477 - - gmx:100779757 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1477 7 32091827 32096184 Vra7g1477 7 32091827 32096184 ECH
Vra7g1477 7 32091827 32096184 Vra11g0303 11 2135824 2142090 PCT